Pairwise Alignments

Query, 474 a.a., sigma-54-dependent transcriptional regulator from Variovorax sp. SCN45

Subject, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  182 bits (462), Expect = 2e-50
 Identities = 99/234 (42%), Positives = 150/234 (64%), Gaps = 5/234 (2%)

Query: 138 LVAHSDAMKSLLAEVGAFADCDHSVLVRGETGVGKERIAQQLHLGHQHYSKGAFVAVNCG 197
           LV  S  ++ +   +   +  + +VL+ GE+G GKE +A+ +H  H     G FV +NCG
Sbjct: 137 LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHY-HSGRRNGPFVPINCG 195

Query: 198 AIPDGLFESLFFGHTKGSFTGAVHAHRGYFEQATGGTLFLDEIGDLPRYQQVKLLRVLED 257
           AIP  L ES  FGH KG+FTGA+ A +G FE A GGTLFLDEIGD+P   QVKLLRVL++
Sbjct: 196 AIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQE 255

Query: 258 NAVTRLGATAPIRVDFRLVAATNRNLREMVASGEFRADLFYRLAVIELHVPSLEERGEVD 317
               R+G  + I+ + R++AAT+RNL EM+   +FR DL+YRL V  + +P+L +R  +D
Sbjct: 256 RCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDR--ID 313

Query: 318 KI-AIFKALLSNVLGDELEALGETPHWLSDAVAETYFPGNVRQLRNLAERVGVI 370
            I  + + L++ +  +  + +  TP  + +++ E  +PGNVR+L NL ER+ ++
Sbjct: 314 DIPLLLQELMTRMEAEGAQPICFTPRAI-NSMMEHDWPGNVRELANLVERMVIL 366