Pairwise Alignments

Query, 474 a.a., sigma-54-dependent transcriptional regulator from Variovorax sp. SCN45

Subject, 478 a.a., Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) from Pseudomonas syringae pv. syringae B728a

 Score =  199 bits (505), Expect = 2e-55
 Identities = 151/429 (35%), Positives = 218/429 (50%), Gaps = 36/429 (8%)

Query: 54  RPSVAIISVTVIDGGGL---AHATELLQGMPVIWVAAGSRERDSR--TYPPEYLHVLPYD 108
           +P V I  + +    GL   A   E    +PVI + A S + DS   +Y       LP  
Sbjct: 48  QPDVIISDIRMPGASGLDLLARIREQHPRLPVIIMTAHS-DLDSAVASYQGGAFEYLPKP 106

Query: 109 FTCAELRTMVAKLVRQLRAREVAPQAPDV-----LVAHSDAMKSLLAEVGAFADCDHSVL 163
           F   E  ++V +  +  + ++    AP +     ++  + AM+ +   +G  +  + +VL
Sbjct: 107 FDVDEAVSLVKRANQHAQEQQGLDVAPTLTRTPEIIGEAPAMQEVFRAIGRLSHSNITVL 166

Query: 164 VRGETGVGKERIAQQLHLGHQHYSKGAFVAVNCGAIPDGLFESLFFGHTKGSFTGAVHAH 223
           + GE+G GKE +A  LH  H   S   F+A+N  AIP  L ES  FGH KG+FTGA +  
Sbjct: 167 INGESGTGKELVAHALHR-HSPRSASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLR 225

Query: 224 RGYFEQATGGTLFLDEIGDLPRYQQVKLLRVLEDNAVTRLGATAPIRVDFRLVAATNRNL 283
           RG FEQA GGTLFLDEIGD+P   Q +LLRVL D    R+G   P++VD R++AAT++NL
Sbjct: 226 RGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNL 285

Query: 284 REMVASGEFRADLFYRLAVIELHVPSLEERGEVDKIAIFKALLSNVLGDELEALGETPHW 343
             +V +G+FR DLF+RL VI +H+P + +R E         L  + L    + L   P  
Sbjct: 286 ETLVQAGKFREDLFHRLNVIRIHIPRMSDRRE-----DIPTLAKHFLSRAAQELAVEPKL 340

Query: 344 LSDAVAETY-----FPGNVRQLRNLAERVGVIA--RQLHSWD-----QNLIQRAIALTRG 391
           L  A  E Y     +PGNVRQL N    + V+A  R++H  D      +L Q A  +T  
Sbjct: 341 LK-AETEEYLKHLPWPGNVRQLENTCRWITVMASGREVHISDLPPELLSLPQDAAPVTNW 399

Query: 392 TPAPAISADRNGAGGGGGIGLDGGSDRKGWNSGERNRIIAALEVNDWKRQDTAQHLGISR 451
             A    AD+  + G   + LD         + ER  I  AL+    +R+D A  LG  R
Sbjct: 400 EQALRQWADQALSRGQSSL-LDSAVP-----TFERIMIETALKHTAGRRRDAAVLLGWGR 453

Query: 452 KVLWEKMRK 460
             L  K+++
Sbjct: 454 NTLTRKIKE 462