Pairwise Alignments

Query, 321 a.a., tRNA pseudouridine(55) synthase (EC 5.4.99.25) from Variovorax sp. SCN45

Subject, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 37/210 (17%)

Query: 15  GVLLLDKPLGLSSNQALQKAKWLLRAEKAGHTGTLDPLATGVLPLCFGAATKFSQLHLDA 74
           G++++DKP G +S++     + +L   KAGH GTLDP  TG LP+  G  TK   +    
Sbjct: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90

Query: 75  DKTYEATARLGVKTATGDAEGDVIAERSVQVTPEDLARVEAQFTGPIRQVPPMHSALKKD 134
            K Y     L       DAE              D+  +  +FTG I Q PP+ +A+K+ 
Sbjct: 91  PKEYVCLMHL-----HDDAE------------LVDIENIFKEFTGRIHQRPPLKAAVKRS 133

Query: 135 GKALYEYAREGIEIERAPRDVVIHKLAIDTVGAIGDNVIRILATVSKGTYIRTLGEDIGE 194
            +    Y  E +EI+   RD++                         GTY+R L +D+GE
Sbjct: 134 LRIRKIYEIEILEID--GRDILFR------------------TKCQSGTYLRKLVDDMGE 173

Query: 195 ALGCGAHLTSLRRVATGDFVEAQCVTLEAL 224
           ALG  AH+  LRR  +G F E + V L+ L
Sbjct: 174 ALGTSAHMQELRRTISGPFYENEAVYLQDL 203