Pairwise Alignments

Query, 879 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 266 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 49.3 bits (116), Expect = 3e-10
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 542 RQAALRVKVLSILQANRDFTGMDLTGADLSDMDLQGACFRRALLEGADLRRARCEGADFS 601
           R +  R+   ++ +AN   +G DL+GADL   DL+GA  +RA L GA+L  AR +G D  
Sbjct: 52  RLSGARLTGSNLQRAN--LSGADLSGADLRQTDLRGASLQRANLAGANLTGARLDGVDLR 109

Query: 602 EAVLVRAQLS 611
           EA L  A L+
Sbjct: 110 EAWLTEAILT 119



 Score = 44.7 bits (104), Expect = 7e-09
 Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 765 QCSLREIPMEGARFVRATLDTCDLSSCNLTAADLGAAQTPESLFIRSNLSRASLRAANLM 824
           +C L++  +  AR   A L   +L   NL+ ADL  A   ++     +L  ASL+ ANL 
Sbjct: 40  RCDLQDSGLVLARLSGARLTGSNLQRANLSGADLSGADLRQT-----DLRGASLQRANLA 94

Query: 825 NANFNKARLLSADLREANLFRA 846
            AN   ARL   DLREA L  A
Sbjct: 95  GANLTGARLDGVDLREAWLTEA 116



 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 33/84 (39%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 550 VLSILQANRDFTGMDLTGADLSDMDLQGACFRRALLEGADLRRARCEGADFSEAVLVRAQ 609
           VL+ L   R  TG +L  A+LS  DL GA  R+  L GA L+RA   GA+ + A L    
Sbjct: 49  VLARLSGAR-LTGSNLQRANLSGADLSGADLRQTDLRGASLQRANLAGANLTGARLDGVD 107

Query: 610 LSSGDFTRAIFRDTNLAGIHCEQA 633
           L     T AI     LA  H + A
Sbjct: 108 LREAWLTEAILTPQQLALAHIQGA 131



 Score = 42.0 bits (97), Expect = 5e-08
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 784 DTCDLSSCNLTAADLGAAQTPESLFIRSNLSRASLRAANLMNANFNKARLLSADLREANL 843
           + CDL    L  A L  A+        SNL RA+L  A+L  A+  +  L  A L+ ANL
Sbjct: 39  ERCDLQDSGLVLARLSGAR-----LTGSNLQRANLSGADLSGADLRQTDLRGASLQRANL 93

Query: 844 FRADMSQIVIDDVTETRDAYIVHTKTVPAARAAA 877
             A+++   +D V + R+A++      P   A A
Sbjct: 94  AGANLTGARLDGV-DLREAWLTEAILTPQQLALA 126



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 21/81 (25%), Positives = 36/81 (44%)

Query: 590 LRRARCEGADFSEAVLVRAQLSSGDFTRAIFRDTNLAGIHCEQAGFSHALFEGATFEKLK 649
           L   +CE  D  ++ LV A+LS    T +  +  NL+G     A        GA+ ++  
Sbjct: 33  LTTRQCERCDLQDSGLVLARLSGARLTGSNLQRANLSGADLSGADLRQTDLRGASLQRAN 92

Query: 650 FVRCDFSSARLHHLHVIESQL 670
               + + ARL  + + E+ L
Sbjct: 93  LAGANLTGARLDGVDLREAWL 113



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 801 AQTPESL---FIRSNLSRASLRAANLMNANFNKARLLSADLREANLFRADMS 849
           A+ PE L          R  L+ + L+ A  + ARL  ++L+ ANL  AD+S
Sbjct: 23  AENPEDLQRLLTTRQCERCDLQDSGLVLARLSGARLTGSNLQRANLSGADLS 74



 Score = 24.3 bits (51), Expect = 0.010
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 27/117 (23%)

Query: 686 LSDVAIEDCSFRGARLVKAGFLGCRVAGLDFTGAELEACAWTHMNCDEHMSFARALLRTT 745
           L D  +      GARL  +      ++G D +GA+L                        
Sbjct: 43  LQDSGLVLARLSGARLTGSNLQRANLSGADLSGADLR----------------------- 79

Query: 746 CFAGNSSLRNADFEEATLVQCSLREIPMEGARFVRATLDTCDLSSCNLTAADLGAAQ 802
                + LR A  + A L   +L    ++G     A L    L+   L  A +  AQ
Sbjct: 80  ----QTDLRGASLQRANLAGANLTGARLDGVDLREAWLTEAILTPQQLALAHIQGAQ 132