Pairwise Alignments

Query, 645 a.a., Outer membrane component of TAM transport system from Variovorax sp. SCN45

Subject, 582 a.a., outer membrane protein assembly factor from Vibrio cholerae E7946 ATCC 55056

 Score =  147 bits (370), Expect = 2e-39
 Identities = 143/555 (25%), Positives = 235/555 (42%), Gaps = 62/555 (11%)

Query: 109 RLMVAAEANARELLGTLGYFTPTLTLELNETPQGAKAPREIVITVSPGELTKVSNVQISY 168
           R     E +  E L  LGY+ P++   ++E  Q  +A       V+ GE+T++S V I  
Sbjct: 66  RFQSQLERSMTEALNALGYYHPSIDFTVSEDNQRLRA------AVTLGEVTRLSEVDIVI 119

Query: 169 GGPIADDATAEAQRDSIRTAW--ALRAGQPFTQQAWDEAKTTALRSLTAKRFPTGNIEIS 226
            G       AE  RD  R      LR   P     +D  K+        K +  G+ + S
Sbjct: 120 RGE------AEGDRDFQRLIRRSGLRVDAPLNHSLYDNLKSGIRNLALQKGYFNGDFQAS 173

Query: 227 RAEVDADRHEARLSVTYQSGPAYKFGPLVLRGIQRYDPDGARRIARLPSGQDYDQQKLLD 286
           R EV  + ++AR+ + + SG  Y FG   + G Q  D +    +     G+ Y   ++ +
Sbjct: 174 RLEVIPELNQARVILHFDSGIRYLFGATTVEGSQ-IDENRVMSLRPFKQGEPYLVSQVGE 232

Query: 287 AQQRLASSGYYDSVFLTLDT---ESGNPLAAPVIAQLREAPLQKVVLGAGFTTDNGPRLS 343
             Q L+++ ++ SVF+  D    + G  L  P+   L      ++  G G++TD G R S
Sbjct: 233 FNQNLSNTDWFSSVFVEPDLSQLDEGREL--PIKVTLAPQARNQLETGLGYSTDVGVRGS 290

Query: 344 VDHIHNQVPLLGWRAVSRLSVDRDIKSLSTELNAIPDD---------HGWRWFSGAELKS 394
           +      V   G    S  S+    ++++       +D         +G +     + +S
Sbjct: 291 LKWKKPWVNSQGHSFDSSFSLSIPEQTITAGYKIPLEDALNEYYRIQYGMKHLDKRDTES 350

Query: 395 EQSGSYVVDSGRLRGGRNKSSDHIDRSYFLQYDYAQNRGTNAPPSASAVTANWGWTGRYF 454
            +S   +    +L GG +       R+ F++Y     R      ++  +     +T    
Sbjct: 351 LESNLSLERHWQLDGGWH-------RTVFIRYLLENYRQGLQDDNSQFLLPGMTYTRTRT 403

Query: 455 DNNSAPSRGFG---IALEVAAGYTLTGMQTPFTRTYARWLGVLPLGSSDDKETNARRSRL 511
            +NS          I LE      L+  +    +T + WL            T AR  R 
Sbjct: 404 RSNSGLLTWGDKQTITLEYGDPALLSETRVLRLQTGSSWL-----------RTYARNHRA 452

Query: 512 QLRLEGGAVAAKDSAQIPSTLMFLTGGDTTVRGYSYKQIGTVRPDGTTVAGRYLGVASVE 571
            +R++GGA    +  Q+  +L F  GGD  +RGY YK I      G     +Y+  +S+E
Sbjct: 453 LVRVDGGANLVDEFDQLSPSLRFFAGGDNNLRGYGYKSISPQDASGALTGAKYIATSSIE 512

Query: 572 WQRPVVYNNKLTDWESVVFVDAG-AVADKPAELKPKVGVGVGARWRSPVGPVQADLAYGV 630
           +Q  +  N     W + +F+D G A  D P   + K GVG G RW SPVGP++ D A+G+
Sbjct: 513 YQYRLTGN-----WWAAMFMDVGDAFNDNP---EWKKGVGTGIRWISPVGPIRLDFAWGL 564

Query: 631 DS---KRFRLHFRLG 642
           D+     F++HF LG
Sbjct: 565 DAAPGDEFKIHFTLG 579