Pairwise Alignments

Query, 1362 a.a., Inner membrane component of TAM transport system from Variovorax sp. SCN45

Subject, 1254 a.a., DUF490 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  118 bits (295), Expect = 4e-30
 Identities = 125/534 (23%), Positives = 216/534 (40%), Gaps = 72/534 (13%)

Query: 839  STPAGLRQAELRLDAQGDAVRASLTWDSERAGKINADI---DTRVQQRAGGWQWAPDAPL 895
            S   G  +A+       + ++AS   D+   G ++ +I   D R +Q+           +
Sbjct: 783  SVTFGWDKAQFSAQLAKNQLQASWLLDATDNGDLSGNIQIADVRAEQKT----------M 832

Query: 896  GGTIKASLPNLGVWSMLAPPGWRIAGTLDAAATLSGNRAVPRWNGTLGADKLALRAPVEG 955
             G++  +  NL     L          ++A     G    P+ NG +  + + ++  +  
Sbjct: 833  LGSLNLTTFNLDFLQPLIGELSEAKSNINADVQFHGPMLHPQLNGEIAINDIRVKGEISP 892

Query: 956  LDLRDGRLRASLNGERVEITEFTLKGGAGSSARIAGQSGNRSTAASEARSDGGTLSATGD 1015
            +D++ G++    NG +  +                          ++ ++  G L   GD
Sbjct: 893  VDVQSGQVSLKFNGYQAVLN-------------------------ADIQTTDGLLEVDGD 927

Query: 1016 LSWGPASGTASGVRMAMQGQLRALRVLVRTDRQVTLSGDLQAKLDNGQFTVRGKLKTDRA 1075
              W          R+     +  L  +VR      L+  +Q +L   + T    L   R 
Sbjct: 928  ADWQQIEDWRLKARVHAPSMMVELPPMVRVKVIPDLTLTMQPQL--ARVTGNIALPWGRI 985

Query: 1076 VIILPDETAPSLGSDVVVRSAAKDREAAEAAKRESERADAQAAKPQTAKPPDIVVNFDLG 1135
            V+     +A  +  D ++ +A  D E     +R     ++              VN  +G
Sbjct: 986  VVEELPPSAIGVSKDQILLNA--DFEPLTDKERIPFSVESD-------------VNVQIG 1030

Query: 1136 DDFAVQGRGITTRLEGDLEIRSTRLNAPPRITGEVKTVKGQYRAYGQQLDVETGVARFNG 1195
            DDF +   G+   L G L +   + +  P I GEV    GQYR++GQ L ++ G    NG
Sbjct: 1031 DDFQLSAFGLQGNLVGRLNV--AQKDKGPFILGEVNIRNGQYRSFGQDLQIKEGKILMNG 1088

Query: 1196 PFDNPALDILAIR-PNLSQR---AGVQITGTAQSPRVKLYSEPALSDAETLSWVILGR-A 1250
            P D P L I AIR PN +Q    AGV+++G +  P + ++SEPA+  A  LS+++ G+  
Sbjct: 1089 PVDQPYLAITAIRNPNNTQDGVVAGVRVSGPSDEPSLTIFSEPAMPQANALSYLLRGQNI 1148

Query: 1251 SATSGGESALLQQAALSLL--GKIGGSGSGGSLASRFGLDELGFKGPGSGGDLRESAVTL 1308
               +GG +       LSL   GK+      G +   FG+ +L     GSG D   S VT+
Sbjct: 1149 DGEAGGNAMTTTLIGLSLAQSGKL-----VGEIGQAFGVQDLQLDTAGSGDD---SQVTV 1200

Query: 1309 GKRLSKDFYITYERSIGGTFGTLFIFYDLTTKLTLRGQAGQTSGLDLIYTVKYD 1362
               +     + Y   I  + G   + Y L   L L   +G  S +DL+Y  +++
Sbjct: 1201 SGYILPGLQVKYGVGIFNSVGEFTVRYRLMQDLYLEAVSGVDSAVDLLYQFEFN 1254



 Score = 28.1 bits (61), Expect = 0.005
 Identities = 61/287 (21%), Positives = 109/287 (37%), Gaps = 38/287 (13%)

Query: 149 QQLALPVDVDVPFRIDEVRWAGPPALQALNLSGSYSYKAAEHALEVKGVDIADGHYSARV 208
           +Q  + V++DVP     +  A    +  + L G       +  L+   +   +      V
Sbjct: 530 KQWRMSVELDVPDLSKSLPDAKGKVIGDVLLRGDLKQPRVKLVLDADSLQWQELGSIGHV 589

Query: 209 KLQG---PAPMAIDASLNGRVKAPLAEDHDIDVLAEATVKGTLTGTEARLQVAAELKPAE 265
            LQG   P P      L  +V+A   +D  ID + +   +G+    E  L V ++L    
Sbjct: 590 TLQGNLVPLPEP-QGELTLQVRAIQYQDQRIDTV-DLKAQGSQRKHEVTLDVTSDLA--- 644

Query: 266 ESPDAPMEARLQAQIAPWLPQPVIDAKADLRNVDASSLWPGAPETR--LTGTVELTPDAD 323
            S    M  RL+ +       P +  + +L       +W  +P+ +  L     L+ D  
Sbjct: 645 -STSLAMNGRLRTE-------PTLRWQGELER-----MWLNSPQGQWLLQQATALSFDQR 691

Query: 324 TGPAAWKASADIRNSVA---------GPWDEEKLPVEQVQARVGFDGTSWTIPEATVRAG 374
           T      A   ++   +         G   E +L ++Q      F   +  +P+ T  +G
Sbjct: 692 TERVTVAAHCWVQGEASLCLEEEAELGARGETRLAIKQFD----FKQLAGVLPKETKLSG 747

Query: 375 GGRIDAAGKWSPAPAPWQAQATVRGVRPGALYTELSGAPVSGTLKAE 421
           G       KW+P  AP Q QA +  +  G +  +L+ +   G  KA+
Sbjct: 748 GLNGQVWAKWAPKAAP-QLQANLE-LTQGQVTQKLNKSVTFGWDKAQ 792