Pairwise Alignments

Query, 1362 a.a., Inner membrane component of TAM transport system from Variovorax sp. SCN45

Subject, 1783 a.a., conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 86.3 bits (212), Expect = 2e-20
 Identities = 222/962 (23%), Positives = 344/962 (35%), Gaps = 184/962 (19%)

Query: 490  GSGKLSLVLPGGSAQVEGRIAPTAGSGDIKASIDDADAVQRWVQGLPGLSNVFANASAKG 549
            G G   +   G  A+ EG       SGD   S      V  W          FA     G
Sbjct: 895  GGGTGGVAGKGSRARAEGTPGDVTPSGDGLLSGGFEAVVMDWKP-----LAAFAGLPLSG 949

Query: 550  -SAKLDANWQGGWQTIQRRLQNATAPAQRGTAEPTLKAMLGVPRLDLHLPASEPGGAATA 608
              A+L   + G  + +Q    + T+  + G A   + A+     +D+            A
Sbjct: 950  RDAQLHMRFSG--EKVQPSRVSKTSARRGGQA---VSAVFSAAEMDMG-----------A 993

Query: 609  VQLNGLRAELAGSLAQASLTLQGEATTGTQKITIDTRASGGLAGNDQWRAALASLRLQAQ 668
            V  + +R + AG     +  LQ      T   ++    +GG      W  A A+L   A+
Sbjct: 994  VSASHVRLDAAGYADSLATALQ------TASYSLKLTTAGGEMRGISWLTAGATLEGDAR 1047

Query: 669  DSVSPGSAPWVLELSREVTATIRSTSGNAARLDIEASAAAATLRGPVPGT-VRIDWQPLR 727
            D      A + L    ++   +   +G+      E       +R P  G  VR+   P R
Sbjct: 1048 D------ARFDLHTRGDLVTDV---AGSLLMQRAEVQVQRLAVRRPSAGAGVRLTG-PAR 1097

Query: 728  FSQSGA----APNRVFRVQSKGQLQGLPMAWAGALGANTTLGEYGISGDLMFDGDWDIDA 783
             S +G     A +  F  Q + QL                      + DL    +  +  
Sbjct: 1098 LSLAGGPRLDAADMAFEPQGRAQL----------------------TFDLRSGTEASLRL 1135

Query: 784  GDTLRAKARLARQSGDIRVQAGEAALVTRIVSTGTGTASERTMNSATAPNGVEA----PS 839
             D   + ARL   +  +  +    A V+ +     G     T N   + + V      PS
Sbjct: 1136 HDVPVSLARLVVDTVPVAGEVSGEARVSTVEGRTEGAFRFETGNLHLSGDAVRRDGTRPS 1195

Query: 840  TPAGLRQAELRL-DAQGDAVRASLTWDSERAGKINADIDTRVQQRAGGWQWAPDA-PLGG 897
            T + L    L   DA+   + A+L    E      ADI   VQ  A G     +A P+  
Sbjct: 1196 TASLLLTGRLAPEDAKHGRLTAALEVGLEGLEAARADISLPVQGLASGTPALREASPVSA 1255

Query: 898  TIKASLPNLGVWSMLAPPGWRIAGTLDAAATLSGNRAVPRWNGTLGADKLALRA------ 951
             ++        W  +  P  R+AG  D A  ++G         T+ A +LA+R       
Sbjct: 1256 RVRLRGDVAPFWRFVPLPDRRLAGRADVAVDVTG---------TVEAPQLAVRGFLCGGR 1306

Query: 952  ---PVEGLDLRD--GRLR-------------ASLNGERVEITEFTLKGGA---------- 983
                V+G+ L D  G LR             A   G RV +    L GG           
Sbjct: 1307 YEDLVQGILLTDITGELRHDAGNGLVCRLAAADGKGGRVVLNGALLAGGGFGFMAGAAQG 1366

Query: 984  ------GSSAR-IAGQSG-------NRSTAASEARSDGGTLSATGDLSW-----GPASGT 1024
                  G+S R I G S        +R  AA  A S  G   + G +       GP SGT
Sbjct: 1367 GTSLADGASPRAIGGMSALFPTGEDDRVVAAPLASSVRGATPSVGAVQGMGNHAGPTSGT 1426

Query: 1025 AS------GVRMAMQGQLRALRVLVRTDRQVTLSGDLQAKLDNGQFTVRGKLKTDRAVII 1078
                    G  + ++G +  LR   R D  VTLSG ++        ++   L  + A + 
Sbjct: 1427 GQLRAAIPGPYIVLRGAMAGLRPFRRDDLDVTLSGPVELTGPLRAPSLHADLVLEGATL- 1485

Query: 1079 LPDETAPSLGSDVVVRSAAKDREAAEAAKRESERADAQAAKPQTAKPPDIVVNFDLGDDF 1138
               E    LGS   VR+     + A AA R S  A   AA        DI V     +  
Sbjct: 1486 ---ELVNGLGS--TVRTLNVHEKGAIAAGRVSGVALPDAASLLL----DIAVRAP--NRL 1534

Query: 1139 AVQGRGITTRLEGDLEIRSTRLNAPPRITGEVKTVKGQYRAYGQQLDVETGVARFNGPFD 1198
             V+GRG+ +  +G L +  T   A P + G +  V+G++   G+      G   F G   
Sbjct: 1535 FVRGRGLDSEWQGRLHVSGTA--AKPTLRGSLSPVRGRFSLLGKPFVFTKGAITFAGAVP 1592

Query: 1199 -NPALDILAIRPNLSQRAGVQITGTAQSPRVKLYSEPALSDAETLSWVILGRASATSGGE 1257
             +P LD+       +  A +++ G A  P +   S P+L   E ++ V+  +++      
Sbjct: 1593 PDPVLDLELSHAGSTVTAFIRVGGRASKPTLTFDSRPSLPQDEVMAHVLFDKSATELSRF 1652

Query: 1258 SALLQQAALSLLGKIGGSGSG--GSLASRFGLDELGFKGPGSG----------GDLRES- 1304
             AL    A+ +L  +G +G     ++    G+D L   G G G          GD   S 
Sbjct: 1653 EALQAANAMRMLAGVGKAGIDPLATVQETLGIDVLRL-GDGRGTQDTARITPAGDRALSS 1711

Query: 1305 --------------AVTLGKRLSKDFYITYERSI-GGTFGTLFIFYDLTTKLTLRGQAGQ 1349
                          +V  GK L  + Y+  E+    G+FG + +  +L  ++ L G+A  
Sbjct: 1712 PARQAQTPAVPEGPSVEAGKYLMDNVYVGVEQGAEAGSFG-VRVEVELLPRVNLEGRASS 1770

Query: 1350 TS 1351
            TS
Sbjct: 1771 TS 1772



 Score = 36.6 bits (83), Expect = 2e-05
 Identities = 79/327 (24%), Positives = 112/327 (34%), Gaps = 48/327 (14%)

Query: 743  SKGQLQGLPMAWAGALGANTTLGEYGISGDLMFDG---DWDI----DAGDTLRAKARLAR 795
            S G L G+ M W   L      G+ GIS  L  DG   DW      D GD L  +  +A 
Sbjct: 261  SSGSLAGVLMPW---LPREILSGQGGISLSLSGDGTAADWRATARADLGDVLVFEGEVAL 317

Query: 796  QSGDIRVQAGEAALVTRIVSTGTGTASERTMNSATAPNGVEAPST-------------PA 842
                    A   A  +R+ S+G   A      +A+   G   P T              A
Sbjct: 318  TGERHGADAHTDAKGSRVPSSGAALAGVGVTGTASLVPGTATPQTWRALLGERVDVGWSA 377

Query: 843  GLRQAELRLDAQGDAVRASLTWDSERAGKINADIDTRVQQRAGG----WQWAPDAPLGGT 898
             +R A  +    G +VRA     S +  +  A+ +  ++ RAGG     Q+A     G  
Sbjct: 378  TVRDAVSKPVVSGGSVRA-----SSQHWQFTAE-NIMLENRAGGSGFSLQYAAQLADGAR 431

Query: 899  IK--ASLPNLGVWSMLAPPGWRIAGTLDAAATLSGNRAVPRWNGTLGAD-----KLALRA 951
            +    SLP    +  L   G    G+  A   L G        G  G          L  
Sbjct: 432  LAPLVSLP----FGRLVLEG-DAQGSATAQGALLGVSGRAEVGGLPGRQADLPVSYGLSM 486

Query: 952  PVEGLDLRDGRLRASLNGERVEITEFTLKGGAGSSARIAGQSGNRSTAA---SEARSDGG 1008
              EG+D+    LR   +G  +          AG  +R+ G  G         +      G
Sbjct: 487  RREGMDVLLDDLRLETDGASLHANGQGQGQAAGRGSRVQGDVGFELAEGGWLAAVAGAHG 546

Query: 1009 TLSATGDLSWGPASGTASGVRMAMQGQ 1035
             + AT D+  G A  T   + +   GQ
Sbjct: 547  RIRATVDIERGSARRTVGAIPVGQGGQ 573