Pairwise Alignments

Query, 1362 a.a., Inner membrane component of TAM transport system from Variovorax sp. SCN45

Subject, 1449 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  115 bits (289), Expect = 2e-29
 Identities = 132/525 (25%), Positives = 222/525 (42%), Gaps = 73/525 (13%)

Query: 845  RQAELRLDAQGDAVRASLTWDSERAGKINADIDTRVQQRAGGWQWAPDAPLGGTIKASLP 904
            +Q + + +     + +S++++SE      +++   V          PD  L G       
Sbjct: 981  QQLDFKANLDAKRLLSSISFESEDVASWQSEVTVNV---------TPDRTLSGYANIKQI 1031

Query: 905  NLGVWSMLAPPGWRIAGTLDAAATLSGNRAVPRWNGTLGADKLALRAPVEGLDLRDGRLR 964
            NL       P    + G L +    +G    P  +G +               L  G L 
Sbjct: 1032 NLQPLGEFFPQLNTLEGLLTSRLNFAGTLDAPEVSGNVS--------------LTQGALA 1077

Query: 965  ASLNGERVEITEFTLK-GGAGSSARIAGQSGNRSTAASEARSDGGTLSATGDLSWGPASG 1023
             + N   +   + ++  GG  +S +     GN            G    TGD+ W    G
Sbjct: 1078 LTANPTLINKIDMSMDLGGQQASLKGRWMMGN------------GLGRVTGDMRW--PQG 1123

Query: 1024 TASGVRMAMQGQLRALRVLVRTDRQVTLSGDLQAKLDNGQFTVRGKLKTDRAVIILPDET 1083
              SG  +A++G    L V+      + +S DL     + Q  ++G       V+ +P   
Sbjct: 1124 QFSG-ELAIKGD--KLAVIQPPLTLLDVSPDLTIAFSSQQLELKG-------VVDVPS-- 1171

Query: 1084 APSLGSDVVVRSAAKDREAAEAAKRESERADAQAAKPQTAKPPDIV--VNFDLGDDFAVQ 1141
                G+  +V+ A    E   A   +    D+ AA    A P  IV  +N ++G+D  V 
Sbjct: 1172 ----GNIKIVQLA----EGGVALSEDVVFDDSIAAAQPKASPYAIVADLNINVGNDLKVD 1223

Query: 1142 GRGITTRLEGDLEIRSTRLNAPPRITGEVKTVKGQYRAYGQQLDVETGVARFNGPFDNPA 1201
            G G+  +L+G L+++      PP + G++K  +G Y+  GQ L + TG  +F GP   P 
Sbjct: 1224 GMGLKGKLQGTLKLQQQAFR-PPLLFGDIKVKQGSYKFMGQTLKIRTGEVQFVGPTSVPN 1282

Query: 1202 LDILAIRPNLSQR--AGVQITGTAQSPRVKLYSEPALSDAETLSWVILGRASATSGGE-- 1257
            L+I AIR   S+   AGV++TGT   P V L+S PA   AE LS++I G    +S  E  
Sbjct: 1283 LNIEAIREIKSEDLVAGVRVTGTPARPVVTLFSNPAKEQAEILSYIIKGSGFNSSNNEQN 1342

Query: 1258 SALLQQAALSLLGKIGGSGSGGSLASRFG--LDELGFKGPGSGGDLRESAVTLGKRLSKD 1315
            ++L+  AAL L  ++GG G+  ++ S     ++E GF       +  E  V +   +  +
Sbjct: 1343 NSLMMGAALGLGSQVGGGGAINNIGSTATGIIEEFGFSNVQLDTN-DEGRVAISGFIGDN 1401

Query: 1316 FYITYERSIGGTFGTLFIFYDLTTKL---TLRGQAGQTSGLDLIY 1357
              + Y   +      + + Y L ++L   T+ G  GQ+  LD+ Y
Sbjct: 1402 LMVKYGVGVFNPGYEMTVRYYLLSQLYLETVSGTLGQS--LDIYY 1444



 Score = 27.7 bits (60), Expect = 0.008
 Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 17/105 (16%)

Query: 82  TGSLRTGGRIGWLKYQSESIAVEVNDATIGWQLAPLFQRKVQLGEVHAKQVLIE------ 135
           +GSL     +    +  + I VE+ D  + WQ   L Q+++ +  + A Q+ +       
Sbjct: 93  SGSLNKDLTLAHASWSMDGIKVELKDLHLAWQPTCLLQKQLCVNALTASQIDVNIDTEAL 152

Query: 136 -------KRGPPSDKPTEPLQQLALPVDV----DVPFRIDEVRWA 169
                     P +D+P+E +    + +D     ++   +D++R++
Sbjct: 153 SSGSTEADVTPENDQPSELVLPFGIKLDSAELNNINIAVDKMRFS 197