Pairwise Alignments

Query, 2069 a.a., Signal transduction histidine kinase CheA from Variovorax sp. SCN45

Subject, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

 Score =  184 bits (467), Expect = 4e-50
 Identities = 113/337 (33%), Positives = 180/337 (53%), Gaps = 7/337 (2%)

Query: 1565 RQTRELQRGLLRTRMVEFEGISDRLYRVVRQASKDTGKQVRLDIVGGSIEMDRGVLDRMT 1624
            + +++LQ  +L  RM+       R  R+VR      GK+V L I G   E+D+ VL+R+ 
Sbjct: 371  QNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERIV 430

Query: 1625 PAFEHLLRNCVAHGIEDAAAREKAGKDASGLIVIDLHHEGNDVSVSFRDDGAGLDRKRIA 1684
                HL+RN + HG+E    R   GK  +G+I +   H+G  + V   DDGAG+D  ++ 
Sbjct: 431  DPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAGIDCDKLW 490

Query: 1685 ERARVLGLIGAD---QELSAEEATELIFKPGFSTAGQVSELAGRGIGMDVVRAQIAALGG 1741
             +A   G++       +L+ ++   LIF PGFSTA QVS+++GRG+GMDVVR  I  LGG
Sbjct: 491  RKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELGG 550

Query: 1742 RIETHSTPGQGTTFKLVLPLTTAVTHVVMLRAGEVSIGVP-SNLVELVQRVSGTDLDAAY 1800
            +IE  S  G+G+ F + LPLT A+    +++  +    +P   +VE +Q  + +   AA 
Sbjct: 551  QIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQINTASVKHAAG 610

Query: 1801 LHNSHPFGSEQVPFYWAGALLQASTRSEHAAAKNNTLVVVRSAAQRVALHVDEVLGNQEV 1860
                +    E +P      L          + +   +  V SA  RV L VD++L  Q+V
Sbjct: 611  GIELYRLREENIPIL---RLQDELAMGRSGSLEKRLICFVESAGHRVGLLVDDLLDQQQV 667

Query: 1861 VVKNLGPQLARLPGLAGISVLASGAVALIYNPVALAA 1897
            V+K+L    A++ G++G ++L  G+V+LI +   L A
Sbjct: 668  VIKSLESNYAKVAGISGATILGDGSVSLILDIPGLIA 704



 Score = 36.6 bits (83), Expect = 1e-05
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 9/178 (5%)

Query: 1254 AVDVD-LFPIFEEEAAELLPQLGESLRQWAHHPDDSAPRAAVLRTLHTLKGSARLAGAMR 1312
            A+D++ L  IF  E  E L  L   L Q      D      + R  H++KG A       
Sbjct: 2    ALDMEQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHE 61

Query: 1313 LGERAHRMESEIELLGSQGAERADIEKLLGRLDALQATFDALRAADDATQVELAQLVASA 1372
            + E  H +E+ ++L+ +Q  +          +D L  + D +R   D+ + E A  +  A
Sbjct: 62   ISEFTHAVETYLDLIRNQKKQLT-----AQGVDTLLKSCDVIRNMLDSREQETA--IDEA 114

Query: 1373 SASAPAAQLVQVAPEAGVPANDESAAPVAGDEDGETADDIAAAAP-ATASALQPRPAP 1429
                  A+L  +  + G       A PV+ +         A A P ATA   + R  P
Sbjct: 115  LKQQVGAELQALLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVP 172



 Score = 31.2 bits (69), Expect = 6e-04
 Identities = 20/72 (27%), Positives = 35/72 (48%)

Query: 661 LEEDDLQNIFLDEAREVVQNGLEAIAELASYPDDTEELTILRRAFHTLKGSSRMVGLTEF 720
           L+ + L+ IF  E RE ++     + +L     D E L  + RA H++KG +    L E 
Sbjct: 3   LDMEQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEI 62

Query: 721 GDAAWSLEQVLN 732
            +   ++E  L+
Sbjct: 63  SEFTHAVETYLD 74