Pairwise Alignments

Query, 2069 a.a., Signal transduction histidine kinase CheA from Variovorax sp. SCN45

Subject, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

 Score =  174 bits (440), Expect = 6e-47
 Identities = 137/547 (25%), Positives = 243/547 (44%), Gaps = 74/547 (13%)

Query: 1345 DALQATFDALRAADDATQVELAQLVASASASAPAAQLVQVAPEAGVPANDESAAPVAGDE 1404
            +  +   D L  +     VE  ++     AS+P +   + + EA  P+   +A PVA   
Sbjct: 295  EEFEKLLDELHGSGKGPSVEELEMATRPVASSPVSSDAKASAEASAPSTKPAAKPVAKP- 353

Query: 1405 DGETADDIAAAAPATASALQPRPAPALLAPLRAVSSQAVRIRTQLLDRLVAQTGEVIITR 1464
                    AAA PA A   +P  APA  A           ++     R VA  G      
Sbjct: 354  --------AAAKPAVAKE-EPAKAPAPAA-----------VKDSDESREVAAAGG----- 388

Query: 1465 SRLEAELGQLRGSLADLTGNLDRLRQQLRDIEVQAESQMQSRLAQAKDSQQSFDPLEFDR 1524
                A+  Q   ++   T  LD +   + ++ V   +++ S    + D +          
Sbjct: 389  ----AKKAQTESTVRVDTSTLDTIMNMVGEL-VLVRNRLLSLGLNSNDEE---------- 433

Query: 1525 FTRVQELTRMMAESVNDVATVQRTLQKTVQATEDDLSVQARQTRELQRGLLRTRMVEFEG 1584
                      M+++V ++  V                     T +LQ  +++TRM   + 
Sbjct: 434  ----------MSKAVANLDVV---------------------TADLQGAVMKTRMQPIKK 462

Query: 1585 ISDRLYRVVRQASKDTGKQVRLDIVGGSIEMDRGVLDRMTPAFEHLLRNCVAHGIEDAAA 1644
            +  R  RVVR  ++   K++ L++ G   ++D+ +++ +     HL+RN V HGIE    
Sbjct: 463  VFGRFPRVVRDLARSLNKEIDLELRGEETDLDKNLVEALADPLIHLVRNSVDHGIEMPDE 522

Query: 1645 REKAGKDASGLIVIDLHHEGNDVSVSFRDDGAGLDRKRIAERARVLGLIGAD--QELSAE 1702
            R K GK  +G +++    EG+ + ++  DDGAG+D  ++   A   G++  D    L+ +
Sbjct: 523  RAKNGKSRTGKVILSASQEGDHIQLAIVDDGAGMDPDKLRGIAVKRGIMDEDAANRLTNK 582

Query: 1703 EATELIFKPGFSTAGQVSELAGRGIGMDVVRAQIAALGGRIETHSTPGQGTTFKLVLPLT 1762
            E   LIF PGFS+  ++++++GRG+GMDVV+  I  L G I+  ST G+GT   + +PLT
Sbjct: 583  ECFNLIFMPGFSSKEKITDISGRGVGMDVVKTAINTLNGSIDIDSTMGKGTKITIKVPLT 642

Query: 1763 TAVTHVVMLRAGEVSIGVPSNLVELVQRVSGTDLDAAYLHNSHPFGSEQVPFYWAGALLQ 1822
             A+   +M+        +P   V  +  +     +      +     + +P ++    L 
Sbjct: 643  LAILPTLMVGVAGHPFALPLASVNEIFHLDLRRTNVVDGQLTIIVREKSIPLFYLQNWLA 702

Query: 1823 ASTRSEHAAAKNNTLVVVRSAAQRVALHVDEVLGNQEVVVKNLGPQLARLPGLAGISVLA 1882
                       +  +V+V+  +QRV L VD ++G +EVV+K L   L   PG++G ++ +
Sbjct: 703  PKKGKVQLRQGHGHVVIVQIGSQRVGLVVDTLIGQEEVVIKPLDKLLQGTPGMSGATITS 762

Query: 1883 SGAVALI 1889
             G +ALI
Sbjct: 763  DGHIALI 769



 Score = 66.2 bits (160), Expect = 2e-14
 Identities = 111/479 (23%), Positives = 175/479 (36%), Gaps = 82/479 (17%)

Query: 660  ELEEDDLQNIFLDEAREVVQNGLEAIAELASYPDDTEELTILRRAFHTLKGSSRMVGLTE 719
            EL+ED LQ+ FL EA E+++   E + EL + P+D + L  + R FHT+KG +  + L+E
Sbjct: 4    ELDEDILQD-FLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSE 62

Query: 720  FGDAAWSLEQVLNTWLADQRAATPELLSGTERTLREFSEWVEAIAAGQPHSWQAASFSRV 779
              +     E V +     QR  +P L+    + L   +E   A+   +P           
Sbjct: 63   LVETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPL---------- 112

Query: 780  ANALLAGEPVPPPVRVADAEALAVAARHIAAETPVAAPAVAPLPMPALPDLPDLSLTPEP 839
                   +P  P +     + L   ++  + +   AA A          D P+  L  E 
Sbjct: 113  -------QPADPEL----LDELHRLSKPASEDEDEAAEAHF--------DEPEEELVEEI 153

Query: 840  VSHVEPVAHVAPEPVPEPALEPLDWHAPAQSPEVD----DDFASTDFIDF---------- 885
            +  V  V  V  E VP    E     A A S  +D    DD    +F             
Sbjct: 154  IEEV--VEDVVEEAVPNVETEVT---ASASSGVIDKGSIDDINEDEFEKLLDELHGKGKA 208

Query: 886  ---ESKQNTEPAPLLSLP----------SGDEFDFLAPAKTQARAEPEPVVPPAAEPEVP 932
               +S Q    AP  +            + DEF+ L          P       A P  P
Sbjct: 209  PGAQSPQAPASAPAKAASVTNSDLNGDITDDEFEKLLDQLHGKGKGPSIETAAPAAPVTP 268

Query: 933  AEPVASVETESPAATSLP---DFVWEPEPEPEPVPVPAQAQEPEVIEAARPPHEEEPKPE 989
            + P A+   +  AA S P   D + + E E     +    + P V              E
Sbjct: 269  STPKATETPKPAAAKSAPGGDDLMTDEEFEKLLDELHGSGKGPSV-------------EE 315

Query: 990  LQLAAEPEQAPEAAAEPEPEPAPAAIEAAPEPEPEPAPVIAEVLAPIVEAPAAPVEAQIL 1049
            L++A  P  +   +++ +     +A    P  +P   P  A+      E   AP  A + 
Sbjct: 316  LEMATRPVASSPVSSDAKASAEASAPSTKPAAKPVAKPAAAKPAVAKEEPAKAPAPAAVK 375

Query: 1050 VADEVPEPVEAHAPAQPPHQAVEEIAVSSSAEDQV-KVIGPL-RIGIALYNVYLNEADE 1106
             +DE  E   A A      Q    + V +S  D +  ++G L  +   L ++ LN  DE
Sbjct: 376  DSDESRE--VAAAGGAKKAQTESTVRVDTSTLDTIMNMVGELVLVRNRLLSLGLNSNDE 432



 Score = 50.4 bits (119), Expect = 1e-09
 Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 7/175 (4%)

Query: 1255 VDVDLFPIFEEEAAELLPQLGESLRQWAHHPDDSAPRAAVLRTLHTLKGSARLAGAMRLG 1314
            +D D+   F  EA E+L  L E L +  ++P+D     A+ R  HT+KG A       L 
Sbjct: 5    LDEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELV 64

Query: 1315 ERAHRMESEIELL--GSQGAERADIEKLLGRLDALQATFDALRAADDATQVELAQLVASA 1372
            E  H  E+  ++L  G +    + ++ +L  LD +   F A++  +     +   L    
Sbjct: 65   ETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADPELLDELH 124

Query: 1373 SASAPAAQLVQVAPEAGVPANDESAA-----PVAGDEDGETADDIAAAAPATASA 1422
              S PA++    A EA     +E         V  D   E   ++     A+AS+
Sbjct: 125  RLSKPASEDEDEAAEAHFDEPEEELVEEIIEEVVEDVVEEAVPNVETEVTASASS 179