Pairwise Alignments
Query, 2069 a.a., Signal transduction histidine kinase CheA from Variovorax sp. SCN45
Subject, 758 a.a., chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 202 bits (515), Expect = 1e-55
Identities = 193/788 (24%), Positives = 348/788 (44%), Gaps = 98/788 (12%)
Query: 1124 ERLPDSTVALA------HSLAGSSATVGFHSLSGMARLFESALQHLQMQGSGSR----EQ 1173
E PD T L H++ G + GF SL+ M + A + +G R E
Sbjct: 32 ENNPDDTDLLNAIFRGFHTVKGGA---GFLSLTPMVDVCHEAENTFDLLRTGKRSVTAEL 88
Query: 1174 GMVLVAAADELRRLLHQFAVGFLRDPAEGTLQALRDIANS--PMPTEIAMRA---EARPL 1228
+++ A D + + Q G +DPA+ L A + +S P+P+E+ RA E P
Sbjct: 89 MDIILQAVDAINTMFAQTQQGEQQDPADAALLAKLKLLSSGEPLPSELGQRAPEPELIPE 148
Query: 1229 QQVVSSDSIADVALDDSEDAIDLADAVDVDLFPIFEEEAAELLPQLGESLRQWAHHPDDS 1288
+ V ++I +VA+ + E ++ D+ + I + E LL L H +
Sbjct: 149 PEPVI-ETIVEVAVVE-EMPVETVDSASSSIDEINDAEFEALLDAL---------HGNGK 197
Query: 1289 APRAAVLRTLHTLKGSARLAGAMRLGERAHRMESEIELLGSQGAERADIEKLLGRLDALQ 1348
P A +A ++ A++ +A + G + D ++ LD L
Sbjct: 198 GPGVATSNV-----AAASISNAVKPPAQA----------ATSGDDITD-DEFEALLDELH 241
Query: 1349 ATFDALRAADDATQVELAQLVASASASAPAAQLVQVAPEAGVPANDESAAPVAGDEDGET 1408
+ +++ +L V +A ASA V + D+ + + G+
Sbjct: 242 GSGKFSGKVEESVPAKLKAEVVAAPASATVPTATSVDSDE---ITDDEFERLLDELHGKG 298
Query: 1409 ADDIAAAAPATASALQPRPAPALLAPLRAVSSQAVRIRTQLLDRLVAQTGEVIITRSRLE 1468
+ A A A A+ P P A P+ +S T + V EV++
Sbjct: 299 GTPVKAVAKAEAAKTVPTPVAATATPVAPKASV-----TAAIPPTVKPKAEVVV------ 347
Query: 1469 AELGQLRGSLADLTGNLDRLRQQLRDIEVQAESQMQSRLAQAKDSQQSFDPLEFDRFTRV 1528
AE ++ + A + ++ Q E+ ++ A R+
Sbjct: 348 AEKAPVKAAAAASSTSVP-----------QGETTVRVDTA------------------RL 378
Query: 1529 QELTRMMAESVNDVATVQRTLQKTVQATEDDLSVQARQ----TRELQRGLLRTRMVEFEG 1584
++ M+ E V R + + ++++S T +LQ +++TRM +
Sbjct: 379 DQIMNMVGELV---LVRNRLVSLGISRDDEEMSKALANLDLVTADLQGAVMKTRMQPIKK 435
Query: 1585 ISDRLYRVVRQASKDTGKQVRLDIVGGSIEMDRGVLDRMTPAFEHLLRNCVAHGIEDAAA 1644
+ R RVVR ++ K++ L +VG ++D+ +++ + HL+RN V HGIE
Sbjct: 436 VFGRFPRVVRDLARTLNKEIDLVLVGEETDLDKNLVEALADPLVHLVRNSVDHGIEMPND 495
Query: 1645 REKAGKDASGLIVIDLHHEGNDVSVSFRDDGAGLDRKRIAERARVLGLIGADQ--ELSAE 1702
RE +GK +G+I + EG+ + + DDGAG+D +++ + A G++ D ++
Sbjct: 496 REASGKPRTGVITLSASQEGDHILLKIEDDGAGMDPEKLKQIAIKRGVLDEDSAARMTDN 555
Query: 1703 EATELIFKPGFSTAGQVSELAGRGIGMDVVRAQIAALGGRIETHSTPGQGTTFKLVLPLT 1762
EA LIF PGFST ++S+++GRG+GMDVV+ +I L G + S G+GT ++ +PLT
Sbjct: 556 EAYNLIFAPGFSTKVEISDISGRGVGMDVVKTRITQLNGTVHIDSMKGKGTILEIKVPLT 615
Query: 1763 TAVTHVVMLRAGEVSIGVPSNLVELVQRVSGTDLDAAYLHNSHPFGSEQVP-FYWAGALL 1821
A+ +M+ + +P + V + + T + + ++ VP FY L
Sbjct: 616 LAIMPTLMVDVAKQVFALPLSSVNEIFHLDLTKTNIVDGQLTVIVRNKAVPLFYLEHWLH 675
Query: 1822 QASTRSEHAAAKNNTLVVVRSAAQRVALHVDEVLGNQEVVVKNLGPQLARLPGLAGISVL 1881
+ T +H K+ +V+V+ ++ VD ++G +EVV+K LG L PG+AG ++
Sbjct: 676 RNKTNFKHGDKKHGHVVIVQLGIMQIGFVVDALIGQEEVVIKPLGALLHGTPGMAGATIT 735
Query: 1882 ASGAVALI 1889
+ G +ALI
Sbjct: 736 SDGGIALI 743
Score = 69.7 bits (169), Expect = 1e-15
Identities = 94/392 (23%), Positives = 153/392 (39%), Gaps = 54/392 (13%)
Query: 660 ELEEDDLQNIFLDEAREVVQNGLEAIAELASYPDDTEELTILRRAFHTLKGSSRMVGLTE 719
+++E+ LQ+ FL EA E+++ E + L + PDDT+ L + R FHT+KG + + LT
Sbjct: 4 DVDEEILQD-FLIEAGEILELLQEQLVALENNPDDTDLLNAIFRGFHTVKGGAGFLSLTP 62
Query: 720 FGDAAWSLEQVLNTWLADQRAATPELLSGTERTLREFSEWVEAIAAGQPHSWQAASFSRV 779
D E + +R+ T EL+ + + + G+ A+
Sbjct: 63 MVDVCHEAENTFDLLRTGKRSVTAELMDIILQAVDAINTMFAQTQQGEQQDPADAALLAK 122
Query: 780 ANALLAGEPVPPPVRVADAEALAVAARHIAAETPVAAPAVAPLPMPALPDLPDLSLTPE- 838
L +GEP+P + E P + P P P + + ++++ E
Sbjct: 123 LKLLSSGEPLPSELGQRAPE-----------------PELIPEPEPVIETIVEVAVVEEM 165
Query: 839 PVSHVEPVAHVAPEPVPEPALEPL--DWHAPAQSPEVDDDFASTDFIDFESKQNTEPAPL 896
PV V+ + E + + E L H + P V +T + S N P
Sbjct: 166 PVETVDSASSSIDE-INDAEFEALLDALHGNGKGPGV-----ATSNVAAASISNAVKPPA 219
Query: 897 LSLPSG-----DEFDFLAP---AKTQARAEPEPVVPPAAEPEVPAEPVASVETESPAATS 948
+ SG DEF+ L + + E VP + EV A P ++ P ATS
Sbjct: 220 QAATSGDDITDDEFEALLDELHGSGKFSGKVEESVPAKLKAEVVAAPASAT---VPTATS 276
Query: 949 L-PDFVWEPEPE----------PEPVPVPAQAQEPEVI--EAARPPHEEEPKPELQLAAE 995
+ D + + E E PV A+A+ + + A PK + A
Sbjct: 277 VDSDEITDDEFERLLDELHGKGGTPVKAVAKAEAAKTVPTPVAATATPVAPKASVTAAIP 336
Query: 996 PEQAPEA---AAEPEPEPAPAAIEAAPEPEPE 1024
P P+A AE P A AA + P+ E
Sbjct: 337 PTVKPKAEVVVAEKAPVKAAAAASSTSVPQGE 368
Score = 53.5 bits (127), Expect = 1e-10
Identities = 87/340 (25%), Positives = 137/340 (40%), Gaps = 31/340 (9%)
Query: 1251 LADAVDVDLFPIFEEEAAELLPQLGESLRQWAHHPDDSAPRAAVLRTLHTLKGSARLAGA 1310
+A VD ++ F EA E+L L E L ++PDD+ A+ R HT+KG A
Sbjct: 1 MAFDVDEEILQDFLIEAGEILELLQEQLVALENNPDDTDLLNAIFRGFHTVKGGAGFLSL 60
Query: 1311 MRLGERAHRMESEIELL--GSQGAERADIEKLLGRLDALQATFDALRAA---DDATQVEL 1365
+ + H E+ +LL G + ++ +L +DA+ F + D A L
Sbjct: 61 TPMVDVCHEAENTFDLLRTGKRSVTAELMDIILQAVDAINTMFAQTQQGEQQDPADAALL 120
Query: 1366 AQLVASASASAPAAQLVQVAPEAGVPANDESA------APVAGDEDGETADDIAAAAPAT 1419
A+L +S ++L Q APE + E V + ET D +A ++
Sbjct: 121 AKLKLLSSGEPLPSELGQRAPEPELIPEPEPVIETIVEVAVVEEMPVETVD----SASSS 176
Query: 1420 ASALQPRPAPALLAPLR--------AVSS-QAVRIRTQLLDRLVAQTGEVIITRSRLEAE 1470
+ ALL L A S+ A I + A T IT EA
Sbjct: 177 IDEINDAEFEALLDALHGNGKGPGVATSNVAAASISNAVKPPAQAATSGDDITDDEFEAL 236
Query: 1471 LGQLRGSLADLTGNLDR-LRQQLRDIEVQAESQMQSRLAQAKDSQQSFDPLEFDRFTRVQ 1529
L +L GS +G ++ + +L+ V A + A + DS + D EF+R +
Sbjct: 237 LDELHGS-GKFSGKVEESVPAKLKAEVVAAPASATVPTATSVDSDEITDD-EFERL--LD 292
Query: 1530 ELTRMMAESVNDVATVQ--RTLQKTVQATEDDLSVQARQT 1567
EL V VA + +T+ V AT ++ +A T
Sbjct: 293 ELHGKGGTPVKAVAKAEAAKTVPTPVAATATPVAPKASVT 332