Pairwise Alignments

Query, 768 a.a., twitching motility protein PilJ from Variovorax sp. SCN45

Subject, 658 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  163 bits (413), Expect = 2e-44
 Identities = 108/330 (32%), Positives = 179/330 (54%), Gaps = 21/330 (6%)

Query: 448 LMNELQTVAEGDLTQEATVTE-DITGAIADSVNYTVEELRLLVGNVQNTATRV---AQTT 503
           L+ + + +  GDL+    V+  D  G +A + N   + L  +V +++  +  V   AQ  
Sbjct: 339 LVRQAEALGAGDLSVRLNVSSHDEIGQLARAFNQMSQALSTMVEHIRKASQEVNSRAQAL 398

Query: 504 SQVESTSTELLAASTEQLRE----IRETGQSVLTMAERINGVSSQAQESAT---VARQSL 556
           S + S + E +   + ++      + E   + L +A+ +      AQE+A    + R S+
Sbjct: 399 SGLSSGAYEGMEQQSGEITSMAGAVEEFSATSLNIADNMGNTERLAQENAQQTRIGRTSM 458

Query: 557 QAASSGLQAVQNAIGGMNSIRDQIQETSKRIKRLGESSQEIGEITELISDITEQTNVLAL 616
             ASS L+ +    G +NS       T+  I  LG+ SQEIG I  +I+ I EQTN+LAL
Sbjct: 459 DEASSSLEQIA---GALNS-------TATVINTLGQRSQEIGGIVGVITSIAEQTNLLAL 508

Query: 617 NAAIQAASAGEAGRGFSVVAEEVQRLAERSADATRQISALVKAIQTDTQDAVGAMERSTQ 676
           NAAI+AA AGE GRGF+VVA+EV+ LA R+  AT +IS+++ +IQ +T +A+  ME+   
Sbjct: 509 NAAIEAARAGEQGRGFAVVADEVRSLASRTRQATDEISSMINSIQQETGNAISTMEQGNL 568

Query: 677 GVVEGAKLSDNAGTALSEIDRVSRRLADLIEQISQSASREADSANVVAANIQHIFAVTEQ 736
            + EG   + N  TAL+ ID  SR        I+ +   ++ +A ++++N+Q I     +
Sbjct: 569 LMQEGLSRNANVATALARIDEQSRSAGQQFAAITTATQEQSSTATLLSSNLQSIAMANSE 628

Query: 737 TGEGTRTTAQQVRELSQMAEELRRSVARFK 766
             E     A   +EL ++A++LR+ V RF+
Sbjct: 629 QREVVSNLALTAKELEKLAQDLRQEVDRFR 658



 Score = 39.3 bits (90), Expect = 7e-07
 Identities = 60/310 (19%), Positives = 119/310 (38%), Gaps = 44/310 (14%)

Query: 220 QVGAALRDINQQSSTLLEMTETVASLKMQQNATLPEIS--AAGQLVMLTQRIGKSTNEFF 277
           ++G   R  NQ S  L  M E +     + N+    +S  ++G    + Q+ G+ T+   
Sbjct: 362 EIGQLARAFNQMSQALSTMVEHIRKASQEVNSRAQALSGLSSGAYEGMEQQSGEITSMAG 421

Query: 278 TVEGVNPDAVFLLGKDLNTFQETTRGLLDGNAQQRFPGSKDPQTRQQLEAILKTYEQMRT 337
            VE  +  ++ +     N     T  L   NAQQ   G                    RT
Sbjct: 422 AVEEFSATSLNIADNMGN-----TERLAQENAQQTRIG--------------------RT 456

Query: 338 QASAILGNLQGLVAAREAQASILTDSEPLRKSLGDLQDKLSARTGLGAGTIVLLFVLSLA 397
                  +L+ +  A  + A+++        +LG    ++    G+         +L+L 
Sbjct: 457 SMDEASSSLEQIAGALNSTATVI-------NTLGQRSQEIGGIVGVITSIAEQTNLLALN 509

Query: 398 ALALAGAIGFVQVREGRERAAVAERERLAAEQASEEAGRVNNANQAAILRLMNELQTVAE 457
           A   A   G     +GR  A VA+  R  A +  +    +++   +      N + T+ +
Sbjct: 510 AAIEAARAG----EQGRGFAVVADEVRSLASRTRQATDEISSMINSIQQETGNAISTMEQ 565

Query: 458 GDLTQEATVTEDITGAIADSVNYTVEELRLLVGN---VQNTATRVAQTTSQVESTSTELL 514
           G+L  +  ++ +   A A +    ++E     G       TAT+   +T+ + S++ + +
Sbjct: 566 GNLLMQEGLSRNANVATALA---RIDEQSRSAGQQFAAITTATQEQSSTATLLSSNLQSI 622

Query: 515 AASTEQLREI 524
           A +  + RE+
Sbjct: 623 AMANSEQREV 632