Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 186 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score = 72.4 bits (176), Expect = 4e-18
 Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 4/151 (2%)

Query: 5   LLVEHIPSLRRYARALTGNAWAADDLVQDTLERACSKWRLWVVGSDLRAWLFTVMHNIFA 64
           L+  H   +  + R L G+   A DL Q+T  RA      W   + L+ WL  +  N  A
Sbjct: 23  LVRAHQARVFHFIRRLLGSTDEAADLTQETFIRAYQALPRWRPEARLQTWLLQIARNA-A 81

Query: 65  SQVRRTPPPHAVVPLDDLPHELHGGIDSGRGQDTSLDLQ---RCLMQLPEEQRAVLLLVT 121
             + R    H V+  D+    +       R   ++ DL+   R L +LP EQR +LLL  
Sbjct: 82  LDLLRQRQRHVVLAADEQAEPIDPAPSPLRRLQSARDLEMLERLLARLPHEQREILLLRE 141

Query: 122 LEDLSYAEVAKVLGIPAGTVMSRLSRARVRL 152
           +E LSY E+A  L + AGTV SRL+RAR  L
Sbjct: 142 VEGLSYDELAATLQLNAGTVKSRLARAREAL 172