Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 62.4 bits (150), Expect = 4e-15
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 6/156 (3%)

Query: 11  PSLRRYARALTGNAWAADDLVQDTLERACSKWRLWV-VGSDLRAWLFTVMHNIFASQVRR 69
           P L+++     G+   A +LVQ+T+     K  L+    S L  W++T+  N+    +RR
Sbjct: 38  PKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWIYTIARNLSYDLLRR 97

Query: 70  TPPPHAVVPLDDLPHELHGGIDSGRGQDTSLDL-----QRCLMQLPEEQRAVLLLVTLED 124
                A V  DD+  E +   D         DL      + L +LPE Q+ V+  V LE+
Sbjct: 98  QKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEE 157

Query: 125 LSYAEVAKVLGIPAGTVMSRLSRARVRLQELMDGTS 160
           +   +VA +L IP GTV SRL  A  +L+  MD  S
Sbjct: 158 IPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAES 193