Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 184 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

 Score =  101 bits (251), Expect = 8e-27
 Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 18/173 (10%)

Query: 4   RLLVEHIPSLRRYARALTGNAWAADDLVQDTLERACSKWRLWVVGSDLRAWLFTVMHNIF 63
           R ++  +PSLR +A +L G    ADDLVQDT+ +A +K   + +G++++AWLFT++ N  
Sbjct: 10  REMLAALPSLRAFAMSLIGRHDRADDLVQDTIMKAWAKQDHFEIGTNMKAWLFTILRNEL 69

Query: 64  ASQVRRTPPPHAVVPLDDLPHELHGGIDSGRGQDTSLDLQ---RCLMQLPEEQRAVLLLV 120
            SQ+R+         + D    L   +     Q  SLDLQ   R L QLP +QR  ++LV
Sbjct: 70  YSQMRKRGR-----EVQDSDGHLTETLAHHPEQYGSLDLQDFRRALEQLPPDQREAIILV 124

Query: 121 TLEDLSYAEVAKVLGIPAGTVMSRLSRARVRLQELM----------DGTSAPV 163
                SY E A + G   GT+ SR++RAR RLQE++          D TSAP+
Sbjct: 125 GASGFSYEEAATICGCALGTIKSRVNRARQRLQEILQVRGENDYGPDETSAPI 177