Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

 Score =  103 bits (256), Expect = 2e-27
 Identities = 67/164 (40%), Positives = 93/164 (56%), Gaps = 9/164 (5%)

Query: 6   LVEHIPSLRRYARALTGNAWAADDLVQDTLERACSKWRLWVVGSDLRAWLFTVMHNIFAS 65
           L+  +P+LRR+A +L G+   ADDLVQ   ERA +    +  G+   AW+F ++ N++  
Sbjct: 12  LMAFLPNLRRFAISLCGSRDVADDLVQSACERALASAERFEPGTRFDAWIFRILRNLWID 71

Query: 66  QVRRTPPPHAVVPLDDLP--HELHGGIDSGRGQDTSLDLQ---RCLMQLPEEQRAVLLLV 120
           QVRR          DD+   H++ G     R  +  L L+     + +LP+EQR V+LLV
Sbjct: 72  QVRRQKTAGVQ---DDITERHDIAGS-SGERETEARLTLKTVAEAITELPDEQREVVLLV 127

Query: 121 TLEDLSYAEVAKVLGIPAGTVMSRLSRARVRLQELMDGTSAPVR 164
            +E+LSY E A V+GIP GTVMSRL RAR  L E    T A  R
Sbjct: 128 CVEELSYREAADVMGIPIGTVMSRLMRARRSLAEAAGITQATGR 171