Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 173 a.a., RNA polymerase sigma-E factor (sigma-24) protein from Sinorhizobium meliloti 1021

 Score = 87.4 bits (215), Expect = 1e-22
 Identities = 60/157 (38%), Positives = 84/157 (53%), Gaps = 10/157 (6%)

Query: 6   LVEHIPSLRRYARALTGNAWAADDLVQDTLERACSKWRLWVVGSDLRAWLFTVMHNIFAS 65
           +V+ IP+LR +AR  T  ++ ADDLVQ+TL RA      +  G+ L++WLFT+M N F +
Sbjct: 19  VVDLIPALRAFARTFTSASFEADDLVQETLLRALRSIEQFEPGTSLKSWLFTIMRNAFRT 78

Query: 66  QVR-RTPPPHAVVPLDDLPHELHGGIDSGRGQDTSL---DLQRCLMQLPEEQRAVLLLVT 121
           Q + RT          +LP      I +   Q+ S+   +L+  L  L  E R VL+LV 
Sbjct: 79  QYKIRTRESPGSTNCAELP------IPTAPSQEWSVLNGELRSALGALSPEHREVLVLVA 132

Query: 122 LEDLSYAEVAKVLGIPAGTVMSRLSRARVRLQELMDG 158
              +SY E A +     GT+ SRLSRAR  L   M G
Sbjct: 133 GFGMSYKEAADICDCAIGTIKSRLSRARDELTAQMHG 169