Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 200 a.a., RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 57.0 bits (136), Expect = 2e-13
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 21/170 (12%)

Query: 4   RLLVEHIPSLRRYARALTGNAWAADDLVQDTLERACSKWRLWVVGSDLRAWLFTVMHNIF 63
           +L ++H  +L RY     G+   A+DL Q+T  R       +   +    WL+ + HN+ 
Sbjct: 32  QLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAASYEPSAKFNTWLYRIAHNLL 91

Query: 64  ASQVRRTPPPHAVVPLDDLPHELHGGIDSGRGQ------------DTSLDLQRCLMQLPE 111
              VR      AV P+D + H+   G+D+  GQ              SL L+ C+  LP+
Sbjct: 92  IDHVR------AVKPVDLVSHDNGEGLDTFAGQAQSQPDVHWLETQKSLLLKNCVALLPQ 145

Query: 112 EQRAVLLLVTLEDLSYAEVAKVLGIPAGTVMSRLSRARVRLQELMDGTSA 161
            Q+   +L      + A ++ + G+   T+ +  SR R   Q L D  +A
Sbjct: 146 VQKEAFILNIEMGFTAAVISDIAGV---TLEATKSRIRYAYQSLKDCVNA 192