Pairwise Alignments

Query, 317 a.a., Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score =  135 bits (341), Expect = 9e-37
 Identities = 97/300 (32%), Positives = 161/300 (53%), Gaps = 17/300 (5%)

Query: 7   TLQSAAALTLLGAIVATPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKANAAQYTLV 66
           TL SAA   LL   V+  A AQD   VA+V+ +L N FF TM+DGA+A  KA    Y L+
Sbjct: 8   TLISAA---LLSTSVSFVAQAQDT--VAIVLSTLNNPFFVTMKDGAEA--KAKELGYNLI 60

Query: 67  ANGIKDETDTAAQIKMVEQMVAQKINALVIAPADSKALVPVIKTAIDKGILVVNIDNQLD 126
              +  + D + ++  VE +  + + A++I P DS A+   I+ A    I V+ +D    
Sbjct: 61  V--LDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGAS 118

Query: 127 AAALKEKGIQVPFVGPDNRAGAKLVGDALAKELKSGDKVGIIEGVSTTFNAQQRTLGYQD 186
                 +G  V  +  DN  G ++ G  +  ++ S  KV  +EG++ T  A++R  G+ +
Sbjct: 119 ------RGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMN 172

Query: 187 AMKAAGVTVVGVQSGQWEIDKGNTVAAGMLREHPDLKALLAGNDSMALGAVAAVKAAGKT 246
           A+K + + ++  Q   ++  KG  V   +L  +PD++A+ A ND MALGA+ A++A+GK+
Sbjct: 173 AVKGSKMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS 232

Query: 247 GKVLVVGYDNIGAIKPMLADGRVLATADQFAAKQAVFGIETALKAIADKKKQSEMPAEVK 306
             V++VG+D        +  G++ AT  Q        GIETA K +  +K ++ +P  +K
Sbjct: 233 --VMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALK 290