Pairwise Alignments

Query, 317 a.a., Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 341 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score = 90.9 bits (224), Expect = 4e-23
 Identities = 90/328 (27%), Positives = 144/328 (43%), Gaps = 28/328 (8%)

Query: 5   RRTLQSAAALTL-LGAIVATPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKANAAQY 63
           ++T+ SAA   L +G   A+P+ A +     L+ K+  N FF  M++GA A  KA     
Sbjct: 2   KKTVLSAAFGALAMGVAFASPSQAAEV-SACLITKTDTNPFFVKMKEGAAA--KAKELGV 58

Query: 64  TLVANGIKDETDTAAQIKMVEQMVAQKINALVIAPADSKALVPVIKTAIDKGILVVNIDN 123
           TL +   K + D+ +Q+  +E  +A     ++IA +D++ +VP ++ A D G+LV+ +D 
Sbjct: 59  TLKSYAGKIDGDSESQVAAIETCIADGAKGILIAASDTQGIVPQVQKARDAGLLVIALDT 118

Query: 124 QLDAAALKEKGIQVPFVGPDNRAGAKLVGDALAKELKSGDKVGIIEGVS-TTFNAQQRTL 182
            L+     +          DN    KL+G   A  L    K   +  +  T        L
Sbjct: 119 PLEPLDAADATF-----ATDNLLAGKLIGQWAAATLGDAAKEAKVAFLDLTPSQPSVDVL 173

Query: 183 GYQDAMKAAGV--------------TVVGVQSGQWEIDKGNTVAAGMLREHPDLKALLAG 228
             Q  M   G+               +VG        + G T    +L++ P +  +   
Sbjct: 174 RDQGFMIGFGIDPKDPNKIGDEDDPRIVGHDITNGNEEGGRTAMENLLQKDPTINVVHTI 233

Query: 229 NDSMALGAVAAVKAAGKTGKVLVVGYDNIGAIKPMLADGRVLATADQFAAKQAVFGIETA 288
           N+  A GA  A+K+ G+   VL+V  D        +A+G + AT+ Q+    A  GIE A
Sbjct: 234 NEPAAAGAYEALKSVGREKDVLIVSVDGGCPGVKNVAEGVIGATSQQYPLMMAALGIE-A 292

Query: 289 LKAIAD---KKKQSEMPAEVKTDVVLVT 313
           +K  AD   K   +E    V T V LVT
Sbjct: 293 IKKFADTGEKPTPTEGKDFVDTGVSLVT 320