Pairwise Alignments

Query, 317 a.a., Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 327 a.a., sugar uptake ABC transporter substrate-binding protein precursor from Sinorhizobium meliloti 1021

 Score =  119 bits (299), Expect = 8e-32
 Identities = 90/286 (31%), Positives = 139/286 (48%), Gaps = 20/286 (6%)

Query: 2   KFTRRTLQSAAALTLLGAIVATPAFAQDKPKVAL-------VMKSLANEFFRTMEDG--- 51
           + +RR    AA      AI  T AFA+  PK+A          ++ +N  +R  +     
Sbjct: 3   RISRRAFMLAATAAGAIAIAGTVAFAE-LPKLAQKETYKVGFAQTESNNPWRIAQTNSMK 61

Query: 52  AKAHQKANAAQYTLVANGIKDETDTAAQIKMVEQMVAQKINALVIAPADSKALVPVIKTA 111
           A+A +  +   YT  A         A Q+  V  M+AQ ++ + +AP + K L+P +  A
Sbjct: 62  AEAEKLGHQLVYTDAAGS------AAKQVADVNSMIAQGVDLIFLAPREEKPLIPAVMAA 115

Query: 112 IDKGILVVNIDNQLDAAALKEKGIQVPFVGPDNRAGAKLVGDALAKELKSGDKVGIIEGV 171
              GI V+ +D  +D +  K     V F+G D     K + + L K      K+  +EG 
Sbjct: 116 KKAGIPVILLDRSVDPSLAKAGEDYVTFIGSDFIEEGKRIAEWLVKNANGKSKIIELEGT 175

Query: 172 STTFNAQQRTLGYQDAMKAA-GVTVVGVQSGQWEIDKGNTVAAGMLREHPDLKALLAGND 230
           + +  A  R  G+ + +KAA G  +V  QSG +  DKG  VA  +L+ HPD   + A ND
Sbjct: 176 TGSSPANDRKKGFDETIKAAGGFEIVASQSGDFARDKGRQVAEALLQAHPDADIVYAHND 235

Query: 231 SMALGAVAAVKAAGKT-GK-VLVVGYDNIGAIKPMLADGRVLATAD 274
            MA+GA+AA++AAGK  GK VLV+  D        + DG++ A  +
Sbjct: 236 EMAIGAIAAIEAAGKVPGKDVLVLSIDGGKEAVQAVIDGKIAAVVE 281