Pairwise Alignments

Query, 317 a.a., Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 313 a.a., sugar ABC transporter from Sinorhizobium meliloti 1021

 Score =  120 bits (302), Expect = 3e-32
 Identities = 98/320 (30%), Positives = 167/320 (52%), Gaps = 22/320 (6%)

Query: 1   MKFTRRTLQSAAALTLLGAIVATPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKANA 60
           MK TRR   +A A  +L A  A PA+A D   +A++  S  N FF+    GA+A  K   
Sbjct: 1   MKLTRRMTITAFA-AVLAASSAVPAYAADL--IAIITPSHDNPFFKAEAVGAEAKAKELG 57

Query: 61  AQYTLVANGIKDETDTAAQIKMVEQMVAQKINALVIAPADSKALVPVIKTAIDKGILVVN 120
            + TLV   +  + D   Q ++++  + +   A+++  A S+A +  ++ A D G+    
Sbjct: 58  YE-TLV---LVHDDDANKQSQLIDTAIGRGAKAIILDNAGSEASIAAVQKAKDAGVPSFL 113

Query: 121 IDNQLDAAALKEKGIQVPFVGPDNRAGAKLVGDALAKEL-KSGDKVGIIEGVSTTFNAQQ 179
           ID +++A      G+ V  +  +N  GA+L  +   K + +SG+ V ++ G     NA  
Sbjct: 114 IDREINAT-----GVAVSQIVSNNYQGAQLGAEEFVKLMGESGNYVELL-GREADLNAGI 167

Query: 180 RTLGYQDAM-KAAGVTVVGVQSGQWEIDKGNTVAAGMLREHPDLKALLAGNDSMALGAVA 238
           R+ GY D + +   + +V  QS  W   +G +    +L+ +PD+K +++GND+MA+GA+A
Sbjct: 168 RSKGYHDVIDEYPEMKMVAQQSANWSQTEGYSKMETILQANPDIKGVISGNDTMAMGAIA 227

Query: 239 AVKAAGKTGKVLVVGYDNIGAIKPMLADGRVLATADQFAAKQAVFGIETALKAIADKKKQ 298
           A++AAG+   V+VVG+D    ++  +  G + AT  Q A  QA   ++ A + I   K  
Sbjct: 228 ALQAAGRK-DVIVVGFDGSNDVRDSIKSGGIKATVLQPAYAQAQMAVQQAHEYITTGK-- 284

Query: 299 SEMPAEVK--TDVVLVTKSS 316
              PAE K   D VL+   +
Sbjct: 285 --APAEEKQLMDCVLINSEN 302