Pairwise Alignments

Query, 317 a.a., Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 333 a.a., sugar ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  101 bits (251), Expect = 3e-26
 Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 11/246 (4%)

Query: 11  AAALTLLGAIVATP-AFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKANAAQYTLVANG 69
           AA    LGA+ A   A AQD P V  V+K     +F  ME+G  A+ K N A  T     
Sbjct: 8   AACTVALGALCAAQLAVAQDAPSVVTVVKVTGENWFTRMEEGVVAYGKDNPAVSTSQIGP 67

Query: 70  IKDETDTAAQIKMVEQMVAQKINALVIAPADSKALVPVIKTAIDKGILVVNIDNQLDAAA 129
            K   D A Q++++E +VA+ +NA+ + P D  AL  V K A+++GI +  I ++ D+  
Sbjct: 68  AK--ADAAQQLRLIEDLVAKNVNAIAVVPMDPSALEGVFKRAMNRGIKI--ITHEADSL- 122

Query: 130 LKEKGIQVPFVGPDNRAGAKLVGDALAKEL-KSGDKVGIIEGVSTTFNAQQRTLGYQDAM 188
              K  QV     DN+       + LA+ + KSG     +  + +  + Q    G ++A 
Sbjct: 123 ---KNTQVDIEAFDNKVFGARFNEKLAECMGKSGKWTSFVGSLGSLTHVQWADGGAENAK 179

Query: 189 KAAGVTVVGVQSGQW-EIDKGNTVAAGMLREHPDLKALLAGNDSMALGAVAAVKAAGKTG 247
           K   + +V  ++  + + +K    A  +LR++PD+K    G+    +G   AV+ AG  G
Sbjct: 180 KYPEMELVSEKNESFNDANKAYEKAREILRKYPDIKGFQGGSAIDVIGIGRAVEEAGLVG 239

Query: 248 KVLVVG 253
           KV VVG
Sbjct: 240 KVCVVG 245