Pairwise Alignments

Query, 542 a.a., Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 517 a.a., D-ribose transporter ATP-binding protein from Pseudomonas fluorescens FW300-N2C3

 Score =  332 bits (852), Expect = 2e-95
 Identities = 187/496 (37%), Positives = 297/496 (59%), Gaps = 10/496 (2%)

Query: 9   VLSLSTMGKDYAAPV-LDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTRGQMLL 67
           +L +  + K +   V L DV L +  G VLAL GENGAGKSTL KI+ G+ QP  G++ L
Sbjct: 26  LLEVVNVSKGFPGVVALSDVQLRVRPGSVLALMGENGAGKSTLMKIIAGIYQPDAGELRL 85

Query: 68  DGQPFAPGSRRDAERLGVRMVMQELGLVTTLSVAENLLLDRLP-SKTGWIRRGKLNELAA 126
            G+P    +   A + G+ M+ QEL L+  +S+AEN+ + R   +    +  G+++   A
Sbjct: 86  RGKPVTFDTPLAALQAGIAMIHQELNLMPHMSIAENIWIGREQLNGLHMVDHGEMHRCTA 145

Query: 127 RQLAKIGMQNIDPATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPRETSHLFE 186
           R L ++ ++ +DP   V  L I ++QMVEIA+ +  D+ +L++DEPT+ +T  E +HLF 
Sbjct: 146 RLLERLRIK-LDPEEQVGNLSIAERQMVEIAKAVSYDSDILIMDEPTSAITETEVAHLFS 204

Query: 187 QIELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRESELVQRMVGRAV 246
            I  LK++G  I+Y++H++ E+  IAD VAV RDG  + ++    +    L+  MVGR +
Sbjct: 205 IIADLKSQGKGIIYITHKMNEVFAIADEVAVFRDGAYIGLQRADSMDGDSLISMMVGREL 264

Query: 247 HEHEGRERRTAGPVLLSARGIGRAQVVRDVDIDLRAGEVMGLAGLVGSGRTELVRLLFGA 306
            +      +  G ++LS R +    + + V  DL AGE++G+AGL+GSGRT +   +FG 
Sbjct: 265 SQLFPVREQPIGELVLSVRDLSLDGIFKGVSFDLHAGEILGIAGLMGSGRTNVAEAIFGV 324

Query: 307 DRADRGEITLYENDQPVQQARKGWRSPMQAIRAGIGLVTEDRKSQGLLLTQSIRVNATLS 366
             +  GEI L  + QPV+ +      P  AI  G  L+TEDRK  GL    S+  N  ++
Sbjct: 325 TPSTGGEIRL--DGQPVRIS-----DPHMAIEKGFALLTEDRKLSGLFPCLSVLENMEMA 377

Query: 367 DLGAISRAGWLQRAKERGIAQKLVELLRIRSRSIEQPVATLSGGNQQKVVFARWLHRECK 426
            L      G++Q+   R + + + + LR+++ S+EQ + TLSGGNQQK + ARWL    +
Sbjct: 378 VLPHYVGNGFIQQKALRALCEDMCKKLRVKTPSLEQCIDTLSGGNQQKALLARWLMTNPR 437

Query: 427 VLLLDEPTRGVDVGARADLYAELDRMTDAGKALLMVSSDLRELMAMCDRIGVMSAGRLVA 486
           +L+LDEPTRG+DVGA+A++Y  +  +   G A++M+SS+L E++ M DR+ VM  G L+ 
Sbjct: 438 ILILDEPTRGIDVGAKAEIYRLISYLASEGMAVIMISSELPEVLGMSDRVMVMHEGDLMG 497

Query: 487 VFERGEWTEQSLLAAA 502
             +R E T++ ++  A
Sbjct: 498 TLDRSEATQERVMQLA 513



 Score = 98.6 bits (244), Expect = 5e-25
 Identities = 70/248 (28%), Positives = 122/248 (49%), Gaps = 12/248 (4%)

Query: 5   RAQPVLSLSTMGKDYAAP-VLDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTRG 63
           R QP+  L    +D +   +   VS  L+AGE+L + G  G+G++ +++ + G+   T G
Sbjct: 271 REQPIGELVLSVRDLSLDGIFKGVSFDLHAGEILGIAGLMGSGRTNVAEAIFGVTPSTGG 330

Query: 64  QMLLDGQPFAPGSRRDAERLGVRMVMQEL---GLVTTLSVAENLLLDRLPSKTGWIRRGK 120
           ++ LDGQP        A   G  ++ ++    GL   LSV EN+ +  LP   G    G 
Sbjct: 331 EIRLDGQPVRISDPHMAIEKGFALLTEDRKLSGLFPCLSVLENMEMAVLPHYVG---NGF 387

Query: 121 LNELAARQLAKIGMQNIDPATP-----VARLGIGQQQMVEIARNLQDDTRVLVLDEPTAM 175
           + + A R L +   + +   TP     +  L  G QQ   +AR L  + R+L+LDEPT  
Sbjct: 388 IQQKALRALCEDMCKKLRVKTPSLEQCIDTLSGGNQQKALLARWLMTNPRILILDEPTRG 447

Query: 176 LTPRETSHLFEQIELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRES 235
           +     + ++  I  L + G+A++ +S  L E+  ++DRV V+ +G L+     +   + 
Sbjct: 448 IDVGAKAEIYRLISYLASEGMAVIMISSELPEVLGMSDRVMVMHEGDLMGTLDRSEATQE 507

Query: 236 ELVQRMVG 243
            ++Q   G
Sbjct: 508 RVMQLASG 515