Pairwise Alignments

Query, 365 a.a., Ribose operon repressor from Variovorax sp. SCN45

Subject, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

 Score =  208 bits (530), Expect = 1e-58
 Identities = 125/338 (36%), Positives = 199/338 (58%), Gaps = 10/338 (2%)

Query: 1   MATIKDVALQAEVSVTTVSHVVNDTRHVSAKVRERVELAIRELGYVPNAMARSLKSNTTS 60
           MAT+KDVA  A VS  TVS  + +   VS+  R+RVE A+ E GY PN++AR+L+ N + 
Sbjct: 1   MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESK 60

Query: 61  TLGMLIPNSSNPYFAEIVRIVEDRCFGAGYTLVLCNTDDEPHRQSVYLQVLAERRIDGLI 120
           T+  ++P+  +PYF+EI+R +ED     GY ++L ++  +  R++ ++ ++  ++ DG++
Sbjct: 61  TIVAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGML 120

Query: 121 VVLTGTGDDDALVKQLHGLRVPTVLVDREIADPACDL--VETAHMQGGLLAVRHLLSLGH 178
           ++ T    D +  +Q +   +P +++  E A P  +L  V   ++     AV +L  LGH
Sbjct: 121 LLGTDLPFDVSKPEQKN---LPPMVMACEFA-PELELPTVHIDNLTSAFEAVNYLTQLGH 176

Query: 179 KRIACIGGQAGVMPSEQRIEGWRMALAEAGATPDIANGDALLWRGGFTSQGGYEAMHAIL 238
           KRIA I G       + R +G++ AL  AG T +          G FT + G +A+  +L
Sbjct: 177 KRIAQISGPQHAALCQFRHQGYQQALRRAGITMN----PTYCTFGDFTFEAGAKAVRQLL 232

Query: 239 RTERKPSAVFVCNDLMAIGALRAAHESGVRVPDDLSIVGFDDIELSAYTSPPLTTVAQPK 298
               +P+A+F  ND MAIGA++ A   G+RVP DLS+VGFDDI+ + Y  PPLTT++QP+
Sbjct: 233 ALPEQPTAIFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPR 292

Query: 299 ERIGAMAVDMLLEQMGGKRRDARKVVLQPELRVRASTA 336
             IG  A+ M+LE + G    A   +L+ +L VR S A
Sbjct: 293 YEIGRQAMLMMLELLRGHDVRAGSRLLETKLVVRESAA 330