Pairwise Alignments

Query, 221 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 190 a.a., RNA polymerase sigma-E factor from Pseudomonas fluorescens FW300-N2E2

 Score =  108 bits (270), Expect = 7e-29
 Identities = 77/192 (40%), Positives = 102/192 (53%), Gaps = 17/192 (8%)

Query: 21  DDQLMLAYAQGDAAAFDVLYARHEGGLFRFVKRLLGARLAAQADEVFQDTWVRIISARDS 80
           D+ L+  Y  GD A+F+VLYARH  GL+RF+  L  +  A  A+E+FQDTW+ +I  R +
Sbjct: 10  DESLLARYRNGDGASFEVLYARHRQGLYRFLVSL--SNKAELAEEIFQDTWLSLI--RSA 65

Query: 81  FSPQG-ATWRTWAFTIAHNLAMDRLRVSGREVALDAHPDNDSDPVPTLDRGVRGAVDAAA 139
             PQG A++RTW F IA N  +D  R  G       +P +DS      D  +    D   
Sbjct: 66  TQPQGRASFRTWLFQIARNRLIDHWRKQGVH-----NPLHDS-----YDEQLHVQPDDTT 115

Query: 140 HPSAEELAFWRAAGRRLLACLDELPTDQRAAFLLHHEDGLTVEALAASLEIGFETVRSRL 199
            P  ++L+  R   R L A L  LP DQR  FLL     L +  +AA      ETV+SRL
Sbjct: 116 SPE-QQLSLSRDQAR-LDAALQALPEDQREVFLLRLHGDLELPQIAALTGAPLETVKSRL 173

Query: 200 RYGLQKLRGCMA 211
           RY  QKL   +A
Sbjct: 174 RYAQQKLHRLLA 185