Pairwise Alignments

Query, 221 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 54.3 bits (129), Expect = 2e-12
 Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 11/179 (6%)

Query: 22  DQLMLAYAQ-GDAAAFDVLYARHEGGLFRFVKRLLGARLAAQADEVFQDTWVRIISARDS 80
           DQ+++   Q GD  AF++L  R++  +   + R +    +    +V Q+ +++   A  +
Sbjct: 7   DQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSN--SGDVADVAQEAFIKAYRAIPT 64

Query: 81  FSPQGATWRTWAFTIAHNLAMDRLRVSGREVALDAHPDNDSDPVPTLDRGVRGAVDAAAH 140
           F  + A + TW + IA N A + +    R        D D++     + G   A+   ++
Sbjct: 65  FRGESAFY-TWLYRIAVNTAKNHIVAQSRRPPAS---DVDAEEAEFYEGG--DALKELSN 118

Query: 141 PSAEELAFWRAAGRRLLACLDELPTDQRAAFLLHHEDGLTVEALAASLEIGFETVRSRL 199
           P  E +   +   + +   +D LP D + A  L   DGL+ E +A  ++    TVRSR+
Sbjct: 119 P--ENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRI 175