Pairwise Alignments

Query, 1143 a.a., Type IV fimbrial biogenesis protein PilY1 from Variovorax sp. SCN45

Subject, 1252 a.a., MSHA biogenesis protein MshQ from Vibrio cholerae E7946 ATCC 55056

 Score = 97.1 bits (240), Expect = 8e-24
 Identities = 114/405 (28%), Positives = 166/405 (40%), Gaps = 57/405 (14%)

Query: 110 NQTGAVVGTKTFPTNQGLQVTFTTVTYGGDGNNGTGADGISFFLSDGKYAPSVGGLGGSL 169
           NQ  AV   + FP    L VT     Y      G GADG+S   SD    P  GG GGSL
Sbjct: 315 NQATAVTYQRIFPAAGNL-VTVEFDYYAWANLTGNGADGVSVIFSDATVTPRTGGFGGSL 373

Query: 170 GYSC-SNVNAQYDGVVGGYLGIGIDEYGNFSNPGDNTNSGPGFKAGRISVRGAGNINWAS 228
           GY+  ++ N    G  GG+LG+G+DE+GN+SN  +    GPGF+   +++RG+ + N+  
Sbjct: 374 GYAQRTDTNPDTPGFAGGWLGVGLDEWGNYSNATEGRQGGPGFRQQAVAIRGSESANY-- 431

Query: 229 LSAMDPVHYPPGTILTPDQQKAAVQNTCK--------TGKVMDYSVTTKTKCDS------ 274
                   Y  GT    +  K  V+ TC+         G    Y +T  ++         
Sbjct: 432 -------QYLVGTAANLN-PKLDVRRTCQWWGCSFSGAGPGHRYFITIDSRSGGGVWVRV 483

Query: 275 ----NGNNCTAV----ATSTPSGKATATSLPDYPLLLNGTAYSNLPAGLSISNQQGVNMP 326
               NG   T +      S P+  AT     D+ L L G+       G S++N +  N  
Sbjct: 484 DRSVNGTMQTVIDWHNVLSNPNQGATPA---DFLLSLAGS------TGASVNNHEIENFK 534

Query: 327 LRG-KATPI-----TYALQITQDGLLSLSYSVNGGAAQNVINKQSITD-TNGPLPDNFRF 379
           +   K+ P+      +   + Q GL   +  V   A  N    Q  TD     L  N   
Sbjct: 535 VCALKSRPVGQLIDHFRFTLPQQGLTCSASEVQIKACANDNCSQLYTDPVTATLSPNSAP 594

Query: 380 GFSAGTGGSSNVHEITCFKAAPVNQSS-SSAGTNVQQSARVEAGTQVYL-AYYHQTNSWG 437
             + G  G S V+       A + ++S  +   NV  S       QV L +Y +  NS+ 
Sbjct: 595 SATGGWLGGSQVNFNNGIATAQLRRNSVGNVSVNVLGSTPASKPFQVNLCSYTNNPNSYS 654

Query: 438 ELTAQDLVSDPTSGIVSINPIANWDASCVLTGGACQATTKTNTAQ 482
             TA   V+   SG   I  + N  A+  +T G  +A  K N +Q
Sbjct: 655 --TANCTVNFADSGF--IVDVPNAYANQTVT-GTIKAVRKDNASQ 694