Pairwise Alignments

Query, 546 a.a., 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type from Variovorax sp. SCN45

Subject, 534 a.a., medium-chain-fatty-acid--CoA ligase AlkK from Phaeobacter inhibens DSM 17395

 Score =  321 bits (823), Expect = 4e-92
 Identities = 192/540 (35%), Positives = 288/540 (53%), Gaps = 42/540 (7%)

Query: 9   PLLISSLIDYAATFHPHAEVVGRTVEGPVHRTNYSEIQRRSKQVANALRTLGVESGDRVG 68
           PLLI  L+  +       E+V     G   R NY+ + +R +Q+AN+L+  G+  G RVG
Sbjct: 14  PLLIKHLLTRSNIASASQEIVS----GTEMRLNYAALGKRVRQLANSLKASGIREGMRVG 69

Query: 69  TLAWNTYRHLALYFGVSGSGAVLHTVNPRLFPEQIDYIVNHAEDKVLFFDTTFAPLVEKL 128
            + W+T+R+L  +F +   GA L T+N RL P Q+ Y +NH +  ++     F PL+E +
Sbjct: 70  VMDWDTHRYLECFFAIPMMGASLFTINVRLSPAQVLYTINHGQPDLIIVHRDFMPLIEGI 129

Query: 129 APGLKSVRAFIAMTDRAHMPAIDVPNLLCYDELVGAQSEAYDWPEFDERTASSLCYTSGT 188
             G       + + D              Y+E +G    ++D+P+FDE   ++L YT+GT
Sbjct: 130 KSGFDRDITIVPIGDGEG-----------YEEWIGKAPGSFDFPDFDENQTATLFYTTGT 178

Query: 189 TGNPKGVLYSHRSTVLHSLMECA-----PDTFGVNSQMTLLLAVPMFHANAWGMPYAAAM 243
           TGNPKGV YSHR  +LH+L   A     P   G +     +   P+FH + WG PYAA M
Sbjct: 179 TGNPKGVSYSHRQLILHTLGLIAGFGAWPGNAGFHRGDVYMPLTPLFHVHGWGFPYAATM 238

Query: 244 TGMKLVMPGPHMDGQSLYELMRDEKVGFSQAVPTIWLMLFQYFDAHPEIDTRAIGLKRIG 303
            G++ V PG + D  ++  L+ DE V FS  VPT+  M+  +    P+ID   +   ++ 
Sbjct: 239 LGLRQVYPGRY-DPDTILRLIADENVTFSHCVPTVLSMVLDH-PGCPQID---LDRWKVI 293

Query: 304 VGGAATPRSMIERFERDFGADFVQGWGMTETSPIGVIGNLLPKHLSMPKEEQLRVKMRQG 363
           +GGAA PR++ +R     G      +GM+ET P   + +L      M  +      +   
Sbjct: 294 IGGAALPRNLQDR-AAAAGISLHAAYGMSETCPFLTVADLSSNDPEMQAQTGFPGPL--- 349

Query: 364 RGVWGVELKIVGEDGQRLPHDGKAFGHLHVRGPWIASGYF-KSEGGPVLDAEGFFPTGDV 422
                V+L++V  D Q +PHDG+  G +  R PW+  GY   ++    L   G+  TGDV
Sbjct: 350 -----VDLRVVTPDMQDVPHDGETTGEVVARAPWLTQGYLDNAQASDELWDGGYLHTGDV 404

Query: 423 ANIDEDGYVQLVDRAKDVIKSGGEWISSIDLENTASLHPAVAEAAVIGIAHPKWQERPLL 482
             I E+G +Q+ DR KDVIK+GGEWISS+ LEN AS    V + A IG+ H KW ERP+L
Sbjct: 405 GYIRENGSLQITDRLKDVIKTGGEWISSLALENIASSCSGVEDVAAIGLPHAKWGERPVL 464

Query: 483 I--VVKRAGSEVTREELLTFLAERV-----VKWWLPEDVVFVDSLPHTATGKLLKTKLRE 535
           +    K A  ++ R  ++  +  RV      KW +P+++VFVD LP T+ GKL K  +R+
Sbjct: 465 VAQAAKDADPDLVRLRVIEAIQSRVGAGEISKWAVPDEIVFVDRLPKTSVGKLDKKLVRK 524