Pairwise Alignments

Query, 519 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 549 a.a., AMP-binding protein from Methanococcus maripaludis S2

 Score =  246 bits (628), Expect = 2e-69
 Identities = 168/516 (32%), Positives = 263/516 (50%), Gaps = 45/516 (8%)

Query: 26  RLDFAGFTDRVARLGAVLRQLGMRPGDRVGMMSLNSHRFVEYFFGTWWGGGVINPVNIRW 85
           R  +  F +R   L   L ++G++ GD +G+ + N   ++ + F T   G V+  VN  +
Sbjct: 33  RFTYKEFDERTDLLAKGLLEIGIKKGDHIGIWARNVPDWLTFMFATAKIGVVLVTVNTAY 92

Query: 86  NPKEVAYSLDDCDTRILLVDDVFAP-------------MAAELRGLSSS-----LRTVVY 127
              E+AY +   D + L + D F               +    RG  +S     L+ V+Y
Sbjct: 93  KSHELAYVMKQSDMKALAIIDSFRDVNYLEILYELVPELKTSQRGKLNSEEFPYLKNVIY 152

Query: 128 CGDGAVPEGMVGYEALLAATDPAEDAPH-------DSDELAAVMYTGGTTGQPKGVMLTH 180
            G      GM     L+   +   D          DSD++  + YT GTTG PKGVMLTH
Sbjct: 153 VGQEK-HRGMYNTTELMLLGNYVSDEKLIEAKKGLDSDDVINMQYTSGTTGFPKGVMLTH 211

Query: 181 GSLCINALGTVAALPRDTQDAAAIVAAPMFHVAGCGVALQSLMRLVPVHVV-PVFDELAV 239
            ++  N    +    + T++    +  P+FH  G  + + +L+      V+  +FD L V
Sbjct: 212 KNILNNGY-YIGEKQKFTEEERLCLPVPLFHCFGIVLGVLALLTHGGTLVMLEIFDPLLV 270

Query: 240 LRTLQSARITEMFLVPTMIKRVIEHPRFAEFDLSSLR--LLSYGAAPIDA---ALLDQAM 294
           L  +Q  + T ++ VPTM      HP F  FDLSSLR  +++    PI+A    + D  M
Sbjct: 271 LAAIQKEKCTAVYGVPTMFIAEFSHPMFEMFDLSSLRTGIMAGSTCPIEAMKKVMSDMYM 330

Query: 295 RAFPGTAFAQVYGMTELSPVVTALPSHCHAPGPDRERLLRSAGTPIPIAELRIVDGDDNE 354
           R    +     YG+TE SPV T       +     E+ + S G  +P  E++I+D +  E
Sbjct: 331 REITIS-----YGLTEASPVFTMT-----SVDDPFEKRVESVGKAMPHCEVKIIDPETGE 380

Query: 355 -VPFGQVGEIVARGPMVMKGYWNKPKET-EAALRGGWMHTGDGGYMDEEGFVFVVDRMKD 412
            +  G VGEI  RG  VMKGY+  P++T E   + GW+H+GD    DE+G+  +V R+KD
Sbjct: 381 TLAPGNVGEICCRGYNVMKGYYKMPEKTAEVIEKDGWLHSGDLAVEDEDGYYKIVGRIKD 440

Query: 413 MIVSGGENVYSAEVENAIAQLPQVLMSAVIGVPDDKWGERVHAVIVRREGMALEAEAVIA 472
           MI+ GGEN+Y  E+E  +  +P +  + V+G+PD+K+GE V A ++ +EG  ++ E V  
Sbjct: 441 MIIRGGENIYPREIEEFLYTMPGINDAQVVGIPDEKYGEIVGAFVIPKEGYEIKEEDVRD 500

Query: 473 HCREQIAGYKCPRSVEFRDALPLSAAGKLQKFQLRE 508
              E+IA YK P+ V   +  P++A+GK+QKF+L E
Sbjct: 501 FALEKIARYKVPKHVFVVEEFPMTASGKIQKFKLTE 536