Pairwise Alignments

Query, 354 a.a., Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) from Variovorax sp. SCN45

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score = 47.0 bits (110), Expect = 2e-09
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 8/75 (10%)

Query: 67  VLLFGPPGLGKTTLSHIIAAELGVNLRQTSGP------VLEKPKDLAALLTNLEPN--DV 118
           VLL GPPG GKT L+  +A E G N    +GP      V E  ++L  +    E N   +
Sbjct: 214 VLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSI 273

Query: 119 LFIDEIHRLSPVVEE 133
           +FIDEI  ++P  +E
Sbjct: 274 IFIDEIDAVAPKRDE 288



 Score = 39.3 bits (90), Expect = 4e-07
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 67  VLLFGPPGLGKTTLSHIIAAELGVNLRQTSGP------VLEKPKDLAALLTNLE--PNDV 118
           VLLFGPPG GKT L+  +A E   N     GP      V E  K +  +          V
Sbjct: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTV 603

Query: 119 LFIDEIHRLSP 129
           +F DEI  ++P
Sbjct: 604 IFFDEIDSVAP 614