Pairwise Alignments

Query, 321 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) from Variovorax sp. SCN45

Subject, 281 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  175 bits (444), Expect = 1e-48
 Identities = 107/311 (34%), Positives = 156/311 (50%), Gaps = 45/311 (14%)

Query: 1   MFSYRHAFHAGNHADVLKHTVLIATLDHLLEKDAALTVVDTHAGAGLYRLDGDYAGTSGE 60
           M SYRH +HAGN+ADVLKH +L+ TL  + +KD  L  +DTHAGAG Y L  ++A  +GE
Sbjct: 1   MLSYRHGYHAGNYADVLKHAMLLQTLQLMHKKDKPLVYIDTHAGAGGYALTDEFAQKTGE 60

Query: 61  AAEGILRLLSGKKEPAAPASAPAPAAKSAAKKAAPEAEAPLADAIARYLGVISDFNSKGG 120
             +G+ +L +                           +  L  ++  Y+  +  FN    
Sbjct: 61  YLDGVAKLWN---------------------------KTDLPKSLQDYVDAVRHFNEDNP 93

Query: 121 ARV--YPGSPFIIQHLLRDHDKLKLFELHPTDSRTLSANIAQLEAGRQIAVLLEDGFGSA 178
             +  YPGSP  I   L   D++ L ELH TD   L       E  +Q+ V+  DG    
Sbjct: 94  EELNFYPGSPAFIDMDLGPKDRMVLHELHGTDHLLLDE---YFEQDKQVKVIKGDGLKGL 150

Query: 179 TKFLPPPSRRALVLMDPSYEMKTDYGRVLDFAAEALKRFATGTYAIWYPIIPRPEAHDLP 238
              +PP  RRALVL+DPSYE+KTDY  V D   +A KRFATG + +WYP++ R +  ++ 
Sbjct: 151 IAAVPPLERRALVLVDPSYEIKTDYQTVADTLIKAHKRFATGVFMLWYPVVNRAQTEEML 210

Query: 239 RRLKTMATKAGKSWLHATLTVKSSKITKDAASGETQRPGLPASGMFLINPPYTLKPLLAE 298
            RL             A   +K     + A   ++   G+ A+G+++INPP+ L  +  E
Sbjct: 211 SRL-------------ANSGIKRQLRIEQAIKPDSNEFGMTAAGLWVINPPWQLDEIANE 257

Query: 299 ALPQLVERLGQ 309
            +  L + LGQ
Sbjct: 258 MVDYLGKTLGQ 268