Pairwise Alignments
Query, 1947 a.a., Excinuclease ABC subunit A, dimeric form from Variovorax sp. SCN45
Subject, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2
Score = 626 bits (1614), Expect = 0.0
Identities = 398/1035 (38%), Positives = 567/1035 (54%), Gaps = 126/1035 (12%)
Query: 6 IRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
I I+GAR+HNL+N+ L + + VVTG SGSGKS++ FDT+YAEGQRRYVE+ SAYARQ
Sbjct: 4 IIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQ 63
Query: 66 FLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAADLFDRET 125
FL M+KP VD +EG+ PAIAI Q ++ RSTVGT+TE+ D+L+LL+AR + E
Sbjct: 64 FLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEH 123
Query: 126 ALPVRHDSPDSIYAQIAERAAAAGDPRLVVTFPVELPASTTAEEVTQWLSASGFTRVQ-- 183
+ + SP+ I +I E + + + P+ T +++ + L++ GF R++
Sbjct: 124 NIRIESQSPEKIAEKIEEEFSET----VTILSPIVRQKKGTYQKLFKDLNSEGFARIRVN 179
Query: 184 -----SEREVATPTGPRKVLDVVADRFRASSAERSRVVEAIEVALKRGSGRVTVHATGAE 238
++ E+ + +++V DR + SR+VEA E AL+R G + V TG +
Sbjct: 180 GEIYRTDDEITLERYKKHDIEIVIDRLTPKD-DHSRLVEACERALERSGGLLIV--TGTK 236
Query: 239 ENAPTDVWKFSTGLHCPESDIRYADPIPSMFSFNSAVGACDTCRGFGRVIGVDLGLVIPN 298
N + +S+ L CP I + + P MFSFNS GAC+ C G G + D L+IP+
Sbjct: 237 NNEEIEKI-YSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPD 295
Query: 299 DKLTLRAGAIKTIQTPAWKEAQDDLMRHAETAGIPRDTPWNKLTDEQKHWVIEGTP---N 355
+ GA+ + L A G TP L+ EQ ++ G+P +
Sbjct: 296 KNKCIADGAVALYRNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGSPEKIH 355
Query: 356 YKEGN------W--NKQWYGVRRFFAYLESKAYKMHIRVLLSKYRSYTQCPTCSGARLKL 407
+K N W NK W G+ L ++ + R L K+ + CP C G RL
Sbjct: 356 FKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRL-- 413
Query: 408 DSLIWRIGSKEDADAVLPPEKRFMPTGAKWTRAQLEALPGLCLHDLMLLPIERLRKFFDR 467
K+ A AV +K + DL L I + +FF+
Sbjct: 414 ---------KDKALAVKIEDKSII--------------------DLTDLSISKAEEFFNN 444
Query: 468 MGQGMAPSLAGGGQAALASPAASNEAESPHPNLPPAGEGARQGEAQALKLLFEEITTRLR 527
+ E + K + +EI +RL+
Sbjct: 445 LK-------------------------------------LTDKEYEIAKQVIKEIKSRLK 467
Query: 528 YLHDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDMNRIT 587
+L+DVG+GYLTL R+S TLSGGE QRI L T +G++L L+VLDEPSIGLH RD ++
Sbjct: 468 FLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLI 527
Query: 588 EAMLRLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGARGGQIVFDGTTDQL-RDADTLT 646
E + +LR+ NTLVVVEHD +L AD V+DMGPG G GG +V GT ++ ++ D+LT
Sbjct: 528 ETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLT 587
Query: 647 GQYLGGRKKIGMGFKRLVSENTHRLILEGVREHNLKNITVDFPLARLVCVTGVSGSGKST 706
G+YL G KI + R S+ L L R++NLK+++V+ P +TGVSGSGKST
Sbjct: 588 GKYLSGELKIEIPKNRRKSDKF--LKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKST 645
Query: 707 LIQDVLAPALMRHFGKATETPGAHD-------------RMLGADHLGDVVFVDQSPIGKT 753
LI + L PAL K+ E+ G D + + VV +DQSPIG+T
Sbjct: 646 LIYENLYPALKEKI-KSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRT 704
Query: 754 ARSNPASYVGAWDAIREIFATAALSRQRGYTASKFSFNSGDGRCPTCGGSGFEHVEMQFL 813
RSNPA+Y +D IR++FA ++ +GY +FSFN GRC C G G +EM FL
Sbjct: 705 PRSNPATYTKVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFL 764
Query: 814 SDVYLRCPDCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVFEADRDVLRVLQP 873
DV++ C +C G RY E LEV+ KGKS ++DVL+++V EA F+ + L+
Sbjct: 765 PDVFVECEECKGARYNHETLEVKY--KGKS--ISDVLNMSVEEAREHFKNIPQISNKLKT 820
Query: 874 ISDVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTLFLFDEPTT 933
+ DVGL Y+KLGQ TLSGGEAQR+KL L++ A G T++L DEPTT
Sbjct: 821 LCDVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKRATG-----------NTIYLLDEPTT 869
Query: 934 GLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGGQVVAEGTP 993
GLHF D+ +L+ L L+E G++++VIEHNLDVI+ +D +IDLGPEGGE GG+++A GTP
Sbjct: 870 GLHFHDVKKLIDVLNSLVEKGNTVVVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTP 929
Query: 994 EQLRENRASLTGAAL 1008
E++ + + S TG L
Sbjct: 930 EEIAKCKLSHTGKFL 944
Score = 512 bits (1319), Expect = e-149
Identities = 290/587 (49%), Positives = 376/587 (64%), Gaps = 29/587 (4%)
Query: 1363 FAEPEVEDLADVA-CPTCEGTRLNATARAVSFGASLANGSGGIGITELARMSVTEVRQWF 1421
+ E+E V+ CP C G RL A AV I +L +S+++ ++F
Sbjct: 391 YRRKELEKFMKVSLCPKCGGKRLKDKALAVKIEDK--------SIIDLTDLSISKAEEFF 442
Query: 1422 EGLALTGREAEIARDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGS 1481
L LT +E EIA+ ++ EIKSRL+FL +VGLGYLTL R + TLSGGEAQRIRLA Q+GS
Sbjct: 443 NNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGS 502
Query: 1482 NLQGVCYVLDEPTIGLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPS 1541
NL GV YVLDEP+IGLH RDNQ L+ LHKL NTLVVVEHDEDTI AD+++D+GP
Sbjct: 503 NLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPG 562
Query: 1542 AGKRGGRLVAEGTVADIQNAGDSQTGRYLRDAIRHPLQARRSIPSPDPQAEDNGEWLTVH 1601
AG GG +VA GT +I DS TG+YL ++ + R + ++L +
Sbjct: 563 AGVHGGDVVAVGTPMEISKNKDSLTGKYLSGELKIEIPKNR---------RKSDKFLKLS 613
Query: 1602 GADLHNLQDLTATLPLHRLVVVTGVSGSGKSTLARDVLLASVQGIVVQRMTKAGRDADAA 1661
+NL+D++ +P V+TGVSGSGKSTL + L +++ + + D +
Sbjct: 614 NCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEKIKSDESVGELDFEDQ 673
Query: 1662 GKRPAWAGCRKVDGYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFADTLEAKAR 1721
C E ID+V+ +DQ+PIG+TPRS PATY +D IR++FA+T EAK +
Sbjct: 674 LYENTKEKCNLEINSE-IDKVVVIDQSPIGRTPRSNPATYTKVFDKIRQVFAETKEAKIK 732
Query: 1722 GYGPARFSFNTGEGRCPGCEGAGVRTIEMSFLPDVKVPCEVCHGARFNPETLAVSWRGKS 1781
GYGP RFSFN GRC C+G GV IEM+FLPDV V CE C GAR+N ETL V ++GKS
Sbjct: 733 GYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEECKGARYNHETLEVKYKGKS 792
Query: 1782 IGDVLKMEVDEAVEFFASMPNIAHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTEL 1841
I DVL M V+EA E F ++P I++ L+ L DVGLGY+ LGQ S TLSGGEAQRIKL EL
Sbjct: 793 ISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQSSTTLSGGEAQRIKLTREL 852
Query: 1842 SKVRDDITRRGQKAPHTLYVLDEPTVGLHMADVEKLIHVLHRLVNGGHSVVVIEHDLDLI 1901
SK + +T+Y+LDEPT GLH DV+KLI VL+ LV G++VVVIEH+LD+I
Sbjct: 853 SK---------RATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTVVVIEHNLDVI 903
Query: 1902 AEADWIIDLGPEGGNAGGRIVAAAPPEEVVRLG-THTGVALAPVLAR 1947
AD IIDLGPEGG GG I+A PEE+ + +HTG L +L++
Sbjct: 904 KCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNILSK 950
Score = 224 bits (571), Expect = 4e-62
Identities = 119/307 (38%), Positives = 182/307 (59%), Gaps = 19/307 (6%)
Query: 1045 IVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARSIV 1104
I AREHNLKN+S+ +PR VVTGVSGSGKST+AFD ++ EGQRRY+ESL+AYAR +
Sbjct: 6 IKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQFL 65
Query: 1105 QPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGIQHCIHDGA 1164
+P+VD++ G+ P +AI+Q+ + +STVGT TE++ +LRLLY ++GI +C
Sbjct: 66 GLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEHNI 125
Query: 1165 AVQPQTPDSIAAQLMRNFKGQHIGLLAPLVSNRKGVYTELADWARPRGFTHLRVDGDFLP 1224
++ Q+P+ IA ++ F + + +L+P+V +KG Y +L GF +RV+G+
Sbjct: 126 RIESQSPEKIAEKIEEEF-SETVTILSPIVRQKKGTYQKLFKDLNSEGFARIRVNGEIYR 184
Query: 1225 TTGFPRIDRFKEHSIELPVASLDVLPSKE--TELREALTKALEHGKGVVHVLSELDGLRA 1282
T ++R+K+H IE+ + D L K+ + L EA +ALE G++ V +
Sbjct: 185 TDDEITLERYKKHDIEIVI---DRLTPKDDHSRLVEACERALERSGGLLIVTGTKNNEEI 241
Query: 1283 AMMAGVSAAGIGRVHVFSTLRACPVCSTSYAELDPRLFSYNSKHGWCPDCVGTGVKLSKD 1342
++S+ ACP+C S+ EL PR+FS+NS G C C G G+K+ D
Sbjct: 242 E-------------KIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFD 288
Query: 1343 QRKVFDD 1349
+ D
Sbjct: 289 ADLIIPD 295
Score = 160 bits (406), Expect = 6e-43
Identities = 105/297 (35%), Positives = 166/297 (55%), Gaps = 47/297 (15%)
Query: 803 SGFEHVEMQFLSDVYLRCPDCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVF- 861
S + E++ V L CP C GKR + + L V++E K ++ D+ DL++++A F
Sbjct: 389 SEYRRKELEKFMKVSL-CPKCGGKRLKDKALAVKIEDK----SIIDLTDLSISKAEEFFN 443
Query: 862 -------------EADRDVLRVLQPISDVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEA 908
+ +++ L+ ++DVGL Y+ L + TLSGGEAQR++LA +
Sbjct: 444 NLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLA---TQI 500
Query: 909 AKGATASKQSVARKGTLFLFDEPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIR 968
T G L++ DEP+ GLH D +L+ L KL ++L+V+EH+ D I
Sbjct: 501 GSNLT---------GVLYVLDEPSIGLHQRDNQKLIETLHKLRNLDNTLVVVEHDEDTIL 551
Query: 969 ASDWLIDLGPEGGEGGGQVVAEGTPEQLRENRASLTGAALADYELAIGPDAYKVAERAAR 1028
+D+++D+GP G GG VVA GTP ++ +N+ SLTG L+ EL I
Sbjct: 552 NADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSG-ELKI------------- 597
Query: 1029 RYIANAKKAPGSDAVQIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILF 1085
N +K+ +++ N R++NLK++SV+IP G F+V+TGVSGSGKSTL ++ L+
Sbjct: 598 EIPKNRRKS--DKFLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLY 652
Score = 69.7 bits (169), Expect = 2e-15
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 1598 LTVHGADLHNLQDLTATLPLHRLVVVTGVSGSGKSTLARDVLLASVQGIVVQRMTKAGRD 1657
+ + GA HNL++++ TLP + L+VVTGVSGSGKST+A D + A Q V+ ++ R
Sbjct: 4 IIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQ 63
Query: 1658 ADAAGKRPAWAGCRKVDGYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFA 1713
+P VD E + + + Q K PRS T +D +R L+A
Sbjct: 64 FLGLMNKP------DVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYA 113
Score = 30.4 bits (67), Expect = 0.001
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 1706 DTIRKLFADTLEAKARGYG-----PARFSFNTGEGRCPGCEGAGVRTIEMSFLPDVKVP 1759
+ I K+++ L G P FSFN+ G C C G G I+M F D+ +P
Sbjct: 239 EEIEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLG---IKMEFDADLIIP 294