Pairwise Alignments
Query, 1947 a.a., Excinuclease ABC subunit A, dimeric form from Variovorax sp. SCN45
Subject, 968 a.a., excinuclease ABC subunit A from Caulobacter crescentus NA1000
Score = 650 bits (1677), Expect = 0.0
Identities = 399/984 (40%), Positives = 567/984 (57%), Gaps = 119/984 (12%)
Query: 1043 VQIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARS 1102
+++ AREHNLK++SVDIPRG+ V+TG+SGSGKS+LAFD ++ EGQRRY+ESL+AYAR
Sbjct: 8 IRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 67
Query: 1103 IVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGIQHCIHD 1162
++ +P+VD + G+ P ++IEQ+ + +STVGT TE+ ++RLL+ ++GI +
Sbjct: 68 FLELMSKPDVDLIEGLSPAISIEQKTTSRNPRSTVGTVTEIHDYMRLLWARVGIPYSPAT 127
Query: 1163 GAAVQPQTPDSIAAQLMRNFKGQHIGLLAPLVSNRKGVYT-ELADWARPRGFTHLRVDGD 1221
G ++ QT + ++ +G + LLAP+V +RKG Y E+ADW + GF L++DG
Sbjct: 128 GLPIESQTISQMVDKITALPEGTRLYLLAPVVRDRKGEYKKEIADWQKA-GFQRLKIDGQ 186
Query: 1222 FLPTTGFPRIDRFKEHSIELPVASLDVLPSKETELREALTKALE--HGKGVVHVLSELDG 1279
+ P P +D+ +H I++ V + P E L +++ +AL G V + +G
Sbjct: 187 YYPIEDAPALDKKFKHDIDVVVDRVVTKPDMEQRLADSIEQALRLADGLAVAEFATLEEG 246
Query: 1280 LR-----------AAMMAGVSAAGIG-RVHVFST-LRACPVCSTSYAELD---------- 1316
A ++G + A I R+ F+ ACPVC A+L
Sbjct: 247 ETEPRRILFSERFACPVSGFTIAEIEPRLFSFNNPAGACPVCDGLGAKLAFDADLVIPDK 306
Query: 1317 ---------------------------PRLFSYNSKHGW------CPDCVGTGVKLSKDQ 1343
R + ++ W D V G K +K
Sbjct: 307 DRTLHGGAVAPWAKGPSPLYTQTLQALARHYGFSMDEPWHKLSTEARDVVLNGSKGAKI- 365
Query: 1344 RKVFDDSVRDDDNK--------GREQTFAEPEV----EDL----ADVACPTCEGTRLNAT 1387
+ V+DD+ R + + E+ + E + E+L +D C +C G RL
Sbjct: 366 KFVYDDNARKYEVEKPFEGVLPNLERRWRETDSSWVREELGRFQSDTPCESCHGKRLKPE 425
Query: 1388 ARAVSFGASLANGSGGIGITELARMSVTEVRQWFEGLA--LTGREAEIARDLVPEIKSRL 1445
A AV G+ I E++ M++ R WF GL L+ ++ EIAR ++ EI RL
Sbjct: 426 ALAVKVS--------GMDIAEVSMMAIRPARDWFAGLEGKLSDKQMEIARRILKEINDRL 477
Query: 1446 EFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHARDNQIL 1505
FL +VGL YL + RG+ TLSGGE+QRIRLA+Q+GS L GV YVLDEP+IGLH RDN L
Sbjct: 478 RFLVDVGLDYLNMSRGSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNTRL 537
Query: 1506 LNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAEGTVADIQNAGDSQ 1565
L +L L + GN+++VVEHDE+ I AD++ID+GP+AG GG +VA+G ADI S
Sbjct: 538 LTSLQGLRDLGNSVLVVEHDEEAILTADYVIDMGPAAGVHGGEIVAQGKPADIMANPKSL 597
Query: 1566 TGRYLRDAIRHPLQARRSIPSPDPQAE-DNGEWLTVHGADLHNLQDLTATLPLHRLVVVT 1624
TG+YL A R I P+ + + L V GA +NL+ +TA +P+ +T
Sbjct: 598 TGQYLTGA--------REIEVPEQRRPISKKKMLRVVGATGNNLKGVTAEIPVGTFTCIT 649
Query: 1625 GVSGSGKSTLARDVLLASVQGIVVQRMTKAGRDADAAGKRPAWAGCRKVDGYETIDRVLE 1684
GVSG GKST + L + +R+ A DA A +R ++G E D+V++
Sbjct: 650 GVSGGGKSTFTIETLYKAA----ARRLNNAS-DAPAPHER--------IEGLEHFDKVID 696
Query: 1685 VDQTPIGKTPRSCPATYIGFWDTIRKLFADTLEAKARGYGPARFSFNTGEGRCPGCEGAG 1744
+DQ+PIG+TPRS PATY G + IR FA E+KARGYGP RFSFN GRC C+G G
Sbjct: 697 IDQSPIGRTPRSNPATYTGAFGPIRDWFAGLPESKARGYGPGRFSFNVKGGRCEACQGDG 756
Query: 1745 VRTIEMSFLPDVKVPCEVCHGARFNPETLAVSWRGKSIGDVLKMEVDEAVEFFASMPNIA 1804
V IEM FLPDV V C++C G R+N ETL V ++GK+I DVL M V+EA +FF ++P I
Sbjct: 757 VIKIEMHFLPDVYVTCDICKGKRYNRETLDVVFKGKTIADVLDMTVEEAADFFKAVPPIR 816
Query: 1805 HPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQKAPHTLYVLDE 1864
++ LK VGL Y+ +GQ + TLSGGEAQR+KL ELSK + TLY+LDE
Sbjct: 817 DKMETLKRVGLSYIKVGQQATTLSGGEAQRVKLSKELSK---------RATGRTLYILDE 867
Query: 1865 PTVGLHMADVEKLIHVLHRLVNGGHSVVVIEHDLDLIAEADWIIDLGPEGGNAGGRIVAA 1924
PT GLH D +KL+ VLH L + G++VVVIEH+LD++ ADW++D GPEGG+ GG IVA
Sbjct: 868 PTTGLHFEDTKKLLEVLHELADQGNTVVVIEHNLDVVKTADWLLDFGPEGGDGGGEIVAV 927
Query: 1925 APPEEVVRL-GTHTGVALAPVLAR 1947
P++V ++ + TG L +L R
Sbjct: 928 GSPQDVAKVEASWTGRYLKELLDR 951
Score = 637 bits (1644), Expect = 0.0
Identities = 398/1020 (39%), Positives = 555/1020 (54%), Gaps = 95/1020 (9%)
Query: 6 IRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
IR+RGAR+HNL+++ +DI GE+ V+TG SGSGKSSL FDT+YAEGQRRYVE+ SAYARQ
Sbjct: 8 IRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 67
Query: 66 FLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAADLFDRET 125
FL+ M KP VD +EG+ PAI+I+Q R+ RSTVGT+TE++D+++LL+AR + T
Sbjct: 68 FLELMSKPDVDLIEGLSPAISIEQKTTSRNPRSTVGTVTEIHDYMRLLWARVGIPYSPAT 127
Query: 126 ALPVRHDSPDSIYAQIAERAAAAGDPRLVVTFPVELPASTT-AEEVTQWLSASGFTRVQS 184
LP+ + + +I A RL + PV +E+ W A GF R++
Sbjct: 128 GLPIESQTISQMVDKIT---ALPEGTRLYLLAPVVRDRKGEYKKEIADWQKA-GFQRLKI 183
Query: 185 EREVA----TPTGPRKV---LDVVADRFRASSAERSRVVEAIEVALKRGSG-RVTVHATG 236
+ + P +K +DVV DR R+ ++IE AL+ G V AT
Sbjct: 184 DGQYYPIEDAPALDKKFKHDIDVVVDRVVTKPDMEQRLADSIEQALRLADGLAVAEFATL 243
Query: 237 AEENAPTDVWKFSTGLHCPESDIRYADPIPSMFSFNSAVGACDTCRGFGRVIGVDLGLVI 296
E FS CP S A+ P +FSFN+ GAC C G G + D LVI
Sbjct: 244 EEGETEPRRILFSERFACPVSGFTIAEIEPRLFSFNNPAGACPVCDGLGAKLAFDADLVI 303
Query: 297 PNDKLTLRAGAIKTIQ---TPAWKEAQDDLMRHAETAGIPRDTPWNKLTDEQKHWVIEGT 353
P+ TL GA+ +P + + L RH G D PW+KL+ E + V+ G+
Sbjct: 304 PDKDRTLHGGAVAPWAKGPSPLYTQTLQALARHY---GFSMDEPWHKLSTEARDVVLNGS 360
Query: 354 PNYKEGNWNKQWYGVRRFFAYLESKAYKMHIRVLLSKYRSYTQCPTCSGARLKLDSLIWR 413
G + F Y + A K +
Sbjct: 361 K------------GAKIKFVY-DDNARKYEV----------------------------- 378
Query: 414 IGSKEDADAVLPP-EKRFMPTGAKWTRAQLEALPGLCLHDLMLLPIERLRKFFDRMGQGM 472
++ + VLP E+R+ T + W R +L G D P E G+ +
Sbjct: 379 ---EKPFEGVLPNLERRWRETDSSWVREEL----GRFQSDT---PCESCH------GKRL 422
Query: 473 APSLAGGGQAALASPAASNEAESPHPNLPPAGEGARQGEAQAL-KLLFEEITTRLRYLHD 531
P + + S A P + EG + + + + +EI RLR+L D
Sbjct: 423 KPEALAVKVSGMDIAEVSMMAIRPARDWFAGLEGKLSDKQMEIARRILKEINDRLRFLVD 482
Query: 532 VGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDMNRITEAML 591
VG+ YL + R S TLSGGE QRI L + +G+ L L+VLDEPSIGLH RD R+ ++
Sbjct: 483 VGLDYLNMSRGSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNTRLLTSLQ 542
Query: 592 RLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGARGGQIVFDGT-TDQLRDADTLTGQYL 650
LRD GN+++VVEHD +L AD VIDMGP G GG+IV G D + + +LTGQYL
Sbjct: 543 GLRDLGNSVLVVEHDEEAILTADYVIDMGPAAGVHGGEIVAQGKPADIMANPKSLTGQYL 602
Query: 651 GGRKKIGMGFKRLVSENTHRLILEGVREHNLKNITVDFPLARLVCVTGVSGSGKSTLIQD 710
G ++I + +R L + G +NLK +T + P+ C+TGVSG GKST +
Sbjct: 603 TGAREIEVPEQRRPISKKKMLRVVGATGNNLKGVTAEIPVGTFTCITGVSGGGKSTFTIE 662
Query: 711 VLAPALMRHFGKATETPGAHDRMLGADHLGDVVFVDQSPIGKTARSNPASYVGAWDAIRE 770
L A R A++ P H+R+ G +H V+ +DQSPIG+T RSNPA+Y GA+ IR+
Sbjct: 663 TLYKAAARRLNNASDAPAPHERIEGLEHFDKVIDIDQSPIGRTPRSNPATYTGAFGPIRD 722
Query: 771 IFATAALSRQRGYTASKFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGKRYRP 830
FA S+ RGY +FSFN GRC C G G +EM FL DVY+ C C GKRY
Sbjct: 723 WFAGLPESKARGYGPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDICKGKRYNR 782
Query: 831 EILEVRVERKGKSYNVADVLDLTVAEAAAVFEADRDVLRVLQPISDVGLDYVKLGQPVPT 890
E L+V KGK+ +ADVLD+TV EAA F+A + ++ + VGL Y+K+GQ T
Sbjct: 783 ETLDVVF--KGKT--IADVLDMTVEEAADFFKAVPPIRDKMETLKRVGLSYIKVGQQATT 838
Query: 891 LSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTLFLFDEPTTGLHFDDIARLMRALRKL 950
LSGGEAQR+KL+ L++ A G TL++ DEPTTGLHF+D +L+ L +L
Sbjct: 839 LSGGEAQRVKLSKELSKRATGR-----------TLYILDEPTTGLHFEDTKKLLEVLHEL 887
Query: 951 LEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGGQVVAEGTPEQLRENRASLTGAALAD 1010
+ G++++VIEHNLDV++ +DWL+D GPEGG+GGG++VA G+P+ + + AS TG L +
Sbjct: 888 ADQGNTVVVIEHNLDVVKTADWLLDFGPEGGDGGGEIVAVGSPQDVAKVEASWTGRYLKE 947
Score = 153 bits (386), Expect = 1e-40
Identities = 106/323 (32%), Positives = 166/323 (51%), Gaps = 53/323 (16%)
Query: 820 CPDCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVFEADRDVL---------RV 870
C C GKR +PE L V+V ++A+V + + A F L R+
Sbjct: 414 CESCHGKRLKPEALAVKVS----GMDIAEVSMMAIRPARDWFAGLEGKLSDKQMEIARRI 469
Query: 871 LQPISD-------VGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKG 923
L+ I+D VGLDY+ + + TLSGGE+QR++LA ++ G T G
Sbjct: 470 LKEINDRLRFLVDVGLDYLNMSRGSGTLSGGESQRIRLA---SQIGSGLT---------G 517
Query: 924 TLFLFDEPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEG 983
L++ DEP+ GLH D RL+ +L+ L + G+S++V+EH+ + I +D++ID+GP G
Sbjct: 518 VLYVLDEPSIGLHQRDNTRLLTSLQGLRDLGNSVLVVEHDEEAILTADYVIDMGPAAGVH 577
Query: 984 GGQVVAEGTPEQLRENRASLTGAALADYELAIGPDAYKVAERAARRYIANAKKAPGSDAV 1043
GG++VA+G P + N SLTG L G +V E+ RR I+ K +
Sbjct: 578 GGEIVAQGKPADIMANPKSLTGQYLT------GAREIEVPEQ--RRPISKKKM------L 623
Query: 1044 QIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARSI 1103
++V A +NLK ++ +IP G F+ +TGVSG GKST + L+ RR + +A
Sbjct: 624 RVVGATGNNLKGVTAEIPVGTFTCITGVSGGGKSTFTIETLYKAAARRLNNASDA----- 678
Query: 1104 VQPAGRPEVDAVYGIPPTVAIEQ 1126
PA ++ + + I+Q
Sbjct: 679 --PAPHERIEGLEHFDKVIDIDQ 699
Score = 145 bits (365), Expect = 3e-38
Identities = 92/270 (34%), Positives = 133/270 (49%), Gaps = 51/270 (18%)
Query: 1317 PRLFSYNSKHGWCPDCVGTGVKLSKDQRKVFDDSVRDDDNKGREQTFAEPEVEDLADV-- 1374
P FS+N K G C C G GV + E+ L DV
Sbjct: 737 PGRFSFNVKGGRCEACQGDGV--------------------------IKIEMHFLPDVYV 770
Query: 1375 ACPTCEGTRLNATARAVSFGASLANGSGGIGITELARMSVTEVRQWFEGLALTGREAEIA 1434
C C+G R N V F G I ++ M+V E +F+
Sbjct: 771 TCDICKGKRYNRETLDVVFK--------GKTIADVLDMTVEEAADFFKA----------- 811
Query: 1435 RDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQG-VCYVLDEP 1493
VP I+ ++E L+ VGL Y+ + + A TLSGGEAQR++L+ +L G Y+LDEP
Sbjct: 812 ---VPPIRDKMETLKRVGLSYIKVGQQATTLSGGEAQRVKLSKELSKRATGRTLYILDEP 868
Query: 1494 TIGLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAEG 1553
T GLH D + LL LH+L ++GNT+VV+EH+ D ++ AD ++D GP G GG +VA G
Sbjct: 869 TTGLHFEDTKKLLEVLHELADQGNTVVVIEHNLDVVKTADWLLDFGPEGGDGGGEIVAVG 928
Query: 1554 TVADIQNAGDSQTGRYLRDAIRHPLQARRS 1583
+ D+ S TGRYL++ + + R++
Sbjct: 929 SPQDVAKVEASWTGRYLKELLDRHEERRKA 958
Score = 61.2 bits (147), Expect = 6e-13
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 1597 WLTVHGADLHNLQDLTATLPLHRLVVVTGVSGSGKSTLARDVLLASVQGIVVQRMTKAGR 1656
++ V GA HNL+D++ +P LVV+TG+SGSGKS+LA D + A Q V+ ++ R
Sbjct: 7 FIRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR 66
Query: 1657 DADAAGKRPAWAGCRKVDGYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFA 1713
+P VD E + + ++Q + PRS T D +R L+A
Sbjct: 67 QFLELMSKP------DVDLIEGLSPAISIEQKTTSRNPRSTVGTVTEIHDYMRLLWA 117
Score = 52.8 bits (125), Expect = 2e-10
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 664 VSENTHRLILEGVREHNLKNITVDFPLARLVCVTGVSGSGKSTLIQDVLAPALMRHFGKA 723
++E + + + G REHNLK+++VD P LV +TG+SGSGKS+L D + R +
Sbjct: 1 MAEQLNFIRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSLAFDTIYAEGQRRY--- 57
Query: 724 TETPGAHDRML----------GADHLGDVVFVDQSPIGKTARSNPASYVGAWDAIRE 770
E+ A+ R + L + ++Q KT NP S VG I +
Sbjct: 58 VESLSAYARQFLELMSKPDVDLIEGLSPAISIEQ----KTTSRNPRSTVGTVTEIHD 110