Pairwise Alignments

Query, 306 a.a., Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Variovorax sp. SCN45

Subject, 386 a.a., homocitrate synthase family protein from Methanococcus maripaludis S2

 Score = 49.3 bits (116), Expect = 1e-10
 Identities = 62/278 (22%), Positives = 110/278 (39%), Gaps = 27/278 (9%)

Query: 9   IVDVGPRDGLQNEKQPVSAEVKIGLVHRLQDAGLKEIEVTSFVSPKWVPQMADNAEVMHG 68
           + D   RDG Q      + + K+ +  +L +  +K+IE          P +++N      
Sbjct: 20  LYDTTLRDGEQTPGVCFAGDQKLEIAKKLDELKIKQIEAG-------FPIVSENERKAIK 72

Query: 69  IRRKPGVRYSVLTPNMKGFEAAIAAPREEWPDEIVVFGAASEAFSQKNINCSIAESIERF 128
                G+   +L  + +  +  I    E   D I+ F A S    +  ++ ++ E  E  
Sbjct: 73  SITGEGLNAQILALS-RVLKEDIDKAIECDVDGIITFIATSPMHLKYKLHKNLDEVEEMG 131

Query: 129 APVVAAALEKGIAVRGAMSCTVGCPYEGEIAPAKVGYLAQLMKGIGVQRVDVADTIGVGT 188
              V  A + G+ V  +       P E  I   K        +  G  RV +ADT+G  T
Sbjct: 132 MKAVEYAKDHGLFVAFSAEDATRTPLEDIIRIHKNA------EEHGADRVHIADTLGCAT 185

Query: 189 PRKVQAAMDATLAHFGVDAISGHFHDTYGQALVNTLAALELGVWNFQSSSAGLGGCPYAK 248
           P+ +         H     I  H H+ +G A++N++  L  G     ++  G+G      
Sbjct: 186 PQAMYHICSELSKHLKKAHIGVHCHNDFGFAVINSIYGLIGGAKAVSTTVNGIG------ 239

Query: 249 GATGNVATEDVVYML-----HGMGIETGI--DLDRLID 279
              GN A E++   L     H MG+ T I  ++ +L++
Sbjct: 240 ERAGNAAIEEIAMALKVLYDHDMGLNTEILTEISKLVE 277