Pairwise Alignments

Query, 306 a.a., Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Variovorax sp. SCN45

Subject, 315 a.a., hydroxymethylglutaryl-CoA lyase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  314 bits (805), Expect = 1e-90
 Identities = 158/294 (53%), Positives = 211/294 (71%), Gaps = 5/294 (1%)

Query: 7   VRIVDVGPRDGLQNEKQPVSAEVKIGLVHRLQDAGLKEIEVTSFVSPKWVPQMADNAEVM 66
           V + ++GPRDGLQNE   V  + K+ L+  L +AG+K IE  SFVSPKWVPQMAD+ EV+
Sbjct: 21  VSLFEMGPRDGLQNEAA-VPTQAKVALIEALANAGVKRIEAGSFVSPKWVPQMADSGEVL 79

Query: 67  HGIRRKPGVRYSVLTPNMKGFEAAIAAPREEWPDEIVVFGAASEAFSQKNINCSIAESIE 126
             IRR+ GV YS LTPN+KG E A+ A   E    + +FGAAS++FSQ+NINCSI ESIE
Sbjct: 80  RQIRRQAGVVYSALTPNVKGLELALDAKASE----VAIFGAASQSFSQRNINCSIEESIE 135

Query: 127 RFAPVVAAALEKGIAVRGAMSCTVGCPYEGEIAPAKVGYLAQLMKGIGVQRVDVADTIGV 186
           RF P++  A    I VRG +SC +GCPYEGEIA ++V  +++++  +G   + + DTIGV
Sbjct: 136 RFIPLMDMAKAANIPVRGYVSCVLGCPYEGEIAASEVARVSEILYKMGCYEISLGDTIGV 195

Query: 187 GTPRKVQAAMDATLAHFGVDAISGHFHDTYGQALVNTLAALELGVWNFQSSSAGLGGCPY 246
           GTP K +  + A +    V+ ++ HFHDTYGQAL N  A L+LGV +F +S AGLGGCPY
Sbjct: 196 GTPLKARKMLQAVMERVPVEKLALHFHDTYGQALANITACLDLGVRSFDASVAGLGGCPY 255

Query: 247 AKGATGNVATEDVVYMLHGMGIETGIDLDRLIDAGVYISEALGREPNSRASKAI 300
           AKGA+GN+A+ED+VYMLHG+G++TGIDL++L  AG  IS+ L R   S+ + AI
Sbjct: 256 AKGASGNLASEDLVYMLHGLGLKTGIDLEKLALAGFGISKQLNRLNGSKVANAI 309