Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 564 a.a., 30S ribosomal protein S1 from Pseudomonas fluorescens FW300-N2C3

 Score = 62.8 bits (151), Expect = 5e-14
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 665 IADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 724
           +  L+EG  ++G V N+  +GAFVDLG   DGL+H++ ++ K +    E+V  GD + VK
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRIKHPSEIVNVGDEIDVK 246

Query: 725 VMEVDVARKRIGLSMK 740
           V++ D  R R+ L +K
Sbjct: 247 VLKYDRERNRVSLGLK 262



 Score = 50.1 bits (118), Expect = 3e-10
 Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 670 EGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQL--SHKFVNDAREVVKTGDIVKVKVME 727
           EG  +   V+N+  +G F +L    +GLVHVS++  ++K ++ ++ VV+ GD V+V V++
Sbjct: 278 EGTRVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSK-VVQVGDEVEVMVLD 336

Query: 728 VDVARKRIGLSMK 740
           +D  R+RI L +K
Sbjct: 337 IDEERRRISLGIK 349



 Score = 48.1 bits (113), Expect = 1e-09
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 654 KVARFNDGVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFV-NDAR 712
           K  + N   D      +G  + GT+ ++  FG F+ L    DGLVH+S +S   V  +A 
Sbjct: 349 KQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAV 408

Query: 713 EVVKTGDIVKVKVMEVDVARKRIGLSMK 740
              K GD +   ++ VD  R+RI L +K
Sbjct: 409 RRFKKGDELDTVILSVDPERERISLGIK 436