Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 787 a.a., Transcription accessory protein (S1 RNA-binding domain) from Xanthomonas campestris pv. campestris strain 8004

 Score =  850 bits (2197), Expect = 0.0
 Identities = 461/772 (59%), Positives = 551/772 (71%), Gaps = 28/772 (3%)

Query: 2   QKIIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSYL 61
           Q+I R +A EI     Q +AA+ LLD GA+VPFIARYRKE T GLDDTQLR LE RL+YL
Sbjct: 8   QQIARTIADEIGAQPAQARAAIALLDEGASVPFIARYRKEVTGGLDDTQLRNLETRLTYL 67

Query: 62  RELEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFGI 121
           RELEDRR A+L +I EQGKL+ ELR+ I  A TK  LED+YLP+K KRRT+ QIARE G+
Sbjct: 68  RELEDRRAAILSSIGEQGKLSDELRSEIVAADTKSRLEDLYLPYKPKRRTRAQIAREAGL 127

Query: 122 EPLADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAEDA 181
           EPLAD LLADPT  P   A  ++     + D         V   L+G R IL ERW EDA
Sbjct: 128 EPLADTLLADPTQAPDTTAAIYVDADKGVAD---------VKAALEGARAILMERWGEDA 178

Query: 182 ALVQSLRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGRA 241
           ALV  LR WL + G++++ +  GK+E  A   K+RDYF++ E + R+PSHR LA+FR R 
Sbjct: 179 ALVGELRSWLNDNGVIRARVAEGKEEAGA---KYRDYFDHAESLARIPSHRLLALFRARR 235

Query: 242 LDILDAKLVLPVEPEPGKPSVAEGRIALHLGWSHAGRPADDLLRKCVAWTWRVKLALSTE 301
            + L   L    + + G    AEGR+A   G S+ GRPAD  L      TWR KL +   
Sbjct: 236 EEFLYLDLDPGTDADAGH-QYAEGRVARSAGISNEGRPADRWLLDACRLTWRAKLHMHLL 294

Query: 302 RDLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGKLV 361
            DLF + RE AE  AI VF DNL+DL+LAAPAGPRVV+GLDPGIRTG K+AVVD+TGKLV
Sbjct: 295 LDLFNQAREKAEAEAIAVFGDNLKDLMLAAPAGPRVVLGLDPGIRTGCKIAVVDATGKLV 354

Query: 362 ETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKMAA 421
            T T++PHEP++ W+ SL TL KLC +H V LIAIGNGTASRETDKLA + I L  +   
Sbjct: 355 ATETIYPHEPKRQWDQSLQTLKKLCLQHNVELIAIGNGTASRETDKLAGEAIALCDRAKL 414

Query: 422 QAGAPEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKID 481
           Q         K+VVSEAGASVYSASEFA++E P++DVSLRGA SIARRLQDPLAELVKI+
Sbjct: 415 Q---------KIVVSEAGASVYSASEFAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIE 465

Query: 482 PKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKAVV 541
           PK+IGVGQYQHDV+Q  LA+ L A VEDCVN+VGV +NTAS  LLSRVSGLS++VA+ +V
Sbjct: 466 PKAIGVGQYQHDVDQYRLAKALDARVEDCVNAVGVYVNTASAALLSRVSGLSSTVAENIV 525

Query: 542 RWRESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQIIV 601
           R R+ NG F  RK LL V   G K FEQ AGFLRI  G +PLDV+ VHPE YP+VE+I+ 
Sbjct: 526 RHRDDNGPFKRRKDLLKVPRLGDKTFEQCAGFLRIADGDEPLDVSAVHPEAYPVVERIVS 585

Query: 602 KTGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFNDG 661
            TGKPI  L+G    L+ LKPE F +E+FGV TV+DIL E+EKPGRDPRP+FK A+F +G
Sbjct: 586 STGKPIKALLGDGSFLRALKPEQFTDEQFGVPTVRDILKEMEKPGRDPRPEFKAAQFAEG 645

Query: 662 VDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIV 721
           ++DI  LK GMILEG VSNVA FGAFVD+GVHQDGLVH+S LS  FV D R+VVK GDIV
Sbjct: 646 IEDIKHLKPGMILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIV 705

Query: 722 KVKVMEVDVARKRIGLSMKLDAAPARRDGPRDNR-FEGAGRGQQQQGRRDNS 772
           KVKV+EVDVARKRI L+ +L   P   D    +R   GAG     QGRRD S
Sbjct: 706 KVKVLEVDVARKRIALTRRLSDTPPPADAAAQSRDTRGAG-----QGRRDGS 752