Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 768 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  785 bits (2027), Expect = 0.0
 Identities = 439/785 (55%), Positives = 539/785 (68%), Gaps = 30/785 (3%)

Query: 8   LAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSYLRELEDR 67
           +A+EIK    QV AAVELLDGGATVPFIARYRKE T GLDDTQLR L  RL+YLRELE R
Sbjct: 12  IASEIKATAAQVAAAVELLDGGATVPFIARYRKEVTGGLDDTQLRVLSERLTYLRELEAR 71

Query: 68  RVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFGIEPLADK 127
           R +++ +I  QGK+T EL   I  A TK ELEDIYLP+K KRRTK +IARE G+  LA+ 
Sbjct: 72  RASIVDSIRSQGKMTDELEGKIAGAVTKAELEDIYLPYKPKRRTKAEIARERGLGALAEA 131

Query: 128 LLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAEDAALVQSL 187
           +L+D ++ PA  A AFL             D   V   LDG RDI++E  +E+A L+  L
Sbjct: 132 ILSDRSVAPAERAAAFLTA-----------DVPDVKTALDGARDIIAEAMSENADLLGRL 180

Query: 188 RVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGRALDILDA 247
           R  +     L++ ++ GK E+ A   KF DYF++ E    V  HRALA+ RG   ++L  
Sbjct: 181 RNHMREVAFLRARVVDGKQESGA---KFSDYFDHSERWATVAGHRALAMLRGWNEEVLSV 237

Query: 248 KLVLPVEPEPG-KPSVAEGRIALHLGWSHAGRPADDLLRKCVAWTWRVKLALSTERDLFT 306
            +V+  E  P  +P+      A ++G      PAD  L + + WTWRVKL+LS   DL  
Sbjct: 238 DIVVDQEASPSLRPTERMIAAAYNVG---DRLPADRWLLEVIGWTWRVKLSLSLSLDLMR 294

Query: 307 RLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGKLVETATV 366
            LRE AE+ AI+VFA NL+DLLLAAPAG R  MGLDPGIRTGVKVAVVD TGKL++TATV
Sbjct: 295 ELRERAEEEAIRVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKLLDTATV 354

Query: 367 FPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKMAAQAGAP 426
           +P  P+ D  G+   L  L  KH V LIAIGNGT SRET+KL AD++         A  P
Sbjct: 355 YPFPPKNDIRGTQAELAALVRKHKVELIAIGNGTGSRETEKLVADML---------AAMP 405

Query: 427 EIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKIDPKSIG 486
             +  KV+VSEAGASVYSASE A+ E P +DVSLRGA SIARRLQDPLAELVKI+PKSIG
Sbjct: 406 APKPTKVIVSEAGASVYSASETAAAEFPGLDVSLRGAVSIARRLQDPLAELVKIEPKSIG 465

Query: 487 VGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKAVVRWRES 546
           VGQYQHDV+QS+L+R+L AVVED VN+VGVDLNTAS PLL+RVSGL  S A+A+V  R++
Sbjct: 466 VGQYQHDVDQSKLSRSLDAVVEDAVNAVGVDLNTASAPLLARVSGLGKSSAEAIVAHRDA 525

Query: 547 NGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQIIVKTGKP 606
            GAFA+RK+LL V   G + FEQ AGFLRI  G++PLD + VHPE Y + ++I+   G+ 
Sbjct: 526 MGAFASRKELLKVPRLGARTFEQCAGFLRIPNGSEPLDASAVHPEAYGVAKKIVAACGRD 585

Query: 607 IAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFNDGVDDIA 666
           +  LM  +  LK L P +F +E+FG+ TVKDIL ELEKPGRDPRP FK A F +GVDDI 
Sbjct: 586 VRSLMADSAELKKLDPRIFVDERFGLPTVKDILAELEKPGRDPRPSFKTATFAEGVDDIK 645

Query: 667 DLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVM 726
           DLK GM LEGTV+NVA FGAFVD+GVHQDGLVHVSQL+ +FV D  EVVK GD+V+V+V 
Sbjct: 646 DLKVGMRLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVQVRVT 705

Query: 727 EVDVARKRIGLSMKLDAAPARRDGPRDNRFEGAGRGQQQQGRRDNSPQPAGQMASAFAKL 786
           EVDVARKRIGLSM+ +      D PR+ R      G +    R  +PQ   Q A   A +
Sbjct: 706 EVDVARKRIGLSMRKEGG---TDTPREARGAAPKGGNRGGSARSQTPQEPAQGAFGAALM 762

Query: 787 QGLRK 791
             ++K
Sbjct: 763 AAMKK 767