Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 568 a.a., 30S ribosomal protein S1 from Sinorhizobium meliloti 1021

 Score = 65.1 bits (157), Expect = 1e-14
 Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 665 IADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 724
           + +L+EG ++EG V N+  +GAFVDLG   DGL+HV+ ++ + VN   E++  G  VKV+
Sbjct: 192 VQNLEEGQVVEGVVKNITDYGAFVDLG-GIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQ 250

Query: 725 VMEVDVARKRIGLSMK 740
           ++ ++    RI L MK
Sbjct: 251 IIRINQETHRISLGMK 266



 Score = 52.4 bits (124), Expect = 7e-11
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 671 GMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVN-DAREVVKTGDIVKVKVMEVD 729
           G  + GTV+N+  +GAFV+L    +GL+H+S++S    N    +++ T   V V V+EVD
Sbjct: 283 GKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILSTSQEVDVVVLEVD 342

Query: 730 VARKRIGLSMK 740
             ++RI L +K
Sbjct: 343 PTKRRISLGLK 353



 Score = 49.7 bits (117), Expect = 4e-10
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 671 GMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLS-HKFVNDAREVVKTGDIVKVKVMEVD 729
           G  +EG V N  +FG F+ L    DG+VH+S L  ++      E    GD+V+  V++VD
Sbjct: 370 GTEVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVD 429

Query: 730 VARKRIGLSMK 740
           V ++RI L +K
Sbjct: 430 VDKERISLGIK 440