Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 788 a.a., S1 domain-containing protein from Phaeobacter inhibens DSM 17395

 Score =  782 bits (2020), Expect = 0.0
 Identities = 440/789 (55%), Positives = 542/789 (68%), Gaps = 39/789 (4%)

Query: 3   KIIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSYLR 62
           +I + +A EI     QV AAV LLD GATVPF+ARYRKEAT GLDDTQLR L  RL YLR
Sbjct: 6   RISQTIATEIGAAAKQVSAAVVLLDEGATVPFVARYRKEATGGLDDTQLRRLAERLEYLR 65

Query: 63  ELEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFGIE 122
           ELE RR A+L+++  Q KLT  L  +I  A TK +LEDIYLP+K KRRTK  IARE G+E
Sbjct: 66  ELEKRRAAILESVKSQDKLTDALATSIAKAETKAQLEDIYLPYKPKRRTKAMIARENGLE 125

Query: 123 PLADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAEDAA 182
           PLAD +LAD T DP   A+ ++  A            +T    L+G RDIL+ER  E AA
Sbjct: 126 PLADTILADRTADPEALAQDYITEAV-----------ATAKDALNGARDILTERLTESAA 174

Query: 183 LVQSLRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGRAL 242
           L+  LR++L  E ++ + ++ GK++  A   KF DYF + E    VPSHRALA+ RG   
Sbjct: 175 LLGRLRMFLQKEAVVTAKVIEGKEQEGA---KFSDYFHHTERWADVPSHRALAMLRGSN- 230

Query: 243 DILDAKLVLPVEPEPGKPSV-AEGRIALHLGWSHAGRPADDLLRKCVAWTWRVKLALSTE 301
              +  L L V PEP +    AE  +A  LG +    P D  LRK   WTWRVKL+LS  
Sbjct: 231 ---EGVLTLDVGPEPEEGVARAEAMVAAELG-AGGNAPGDIWLRKVAGWTWRVKLSLSMM 286

Query: 302 RDLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGKLV 361
            +L   LR  A++ AI+VFA NL+DLL AAPAG R  +GLDPGIRTGVK AVVD+TGKLV
Sbjct: 287 LELMGDLRGRAQEDAIQVFARNLKDLLFAAPAGARPTLGLDPGIRTGVKAAVVDATGKLV 346

Query: 362 ETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKMAA 421
            T T++P +P+ D  G+  ++ KL A+HGV LIAIGNGTASRET+++ A+++K L    A
Sbjct: 347 ATETLYPFQPKNDLRGAQVSIVKLIAEHGVELIAIGNGTASRETERMVAEVLKHLP---A 403

Query: 422 QAGAPEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKID 481
           +  AP     KVVVSEAGASVYSASE A++E PD+DVSLRGA SIARRLQDPLAELVKI+
Sbjct: 404 KVKAPT----KVVVSEAGASVYSASELAAREFPDLDVSLRGAVSIARRLQDPLAELVKIE 459

Query: 482 PKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKAVV 541
           PKSIGVGQYQHDV+Q +L+++L+AV+ED VN+VGVDLN AS PLLS VSGL   +A+A+V
Sbjct: 460 PKSIGVGQYQHDVDQHKLSKSLEAVIEDVVNAVGVDLNMASAPLLSHVSGLGPGLAEAIV 519

Query: 542 RWRESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQIIV 601
             R+ NGAFA+R++LL V   GPKAFEQ AGFLRIR G +PLD + VHPE+Y +  +I+ 
Sbjct: 520 AHRDVNGAFASRRELLKVARLGPKAFEQCAGFLRIREGKEPLDASSVHPESYDVARKIVA 579

Query: 602 KTGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFNDG 661
             G+ I ++MG    LK+L+ E F   + G+ TV+DI  ELEKPGRDPRP F  A F DG
Sbjct: 580 ACGRDIRQIMGDGAALKSLRAEEFVGGEVGLPTVRDIFEELEKPGRDPRPSFVTASFKDG 639

Query: 662 VDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIV 721
           V+ I DLK GM+LEGTV+NVA FGAFVD+GVHQDGLVHVSQL+ +FV D  EVVKTG +V
Sbjct: 640 VETITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVV 699

Query: 722 KVKVMEVDVARKRIGLSMKLDA-----------APARRDGPRDNRFEGAGRGQ-QQQGRR 769
           KV V EVDV RKRI L+MK D             PA+  G R      +GRG+   Q  R
Sbjct: 700 KVTVTEVDVPRKRIALTMKKDGGASAKEERTARGPAKGAGTRQGGKPASGRGKGTGQNAR 759

Query: 770 DNSPQPAGQ 778
            NS Q  GQ
Sbjct: 760 QNSGQNRGQ 768