Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 555 a.a., 30S ribosomal protein S1 (RefSeq) from Shewanella loihica PV-4

 Score = 64.3 bits (155), Expect = 2e-14
 Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 665 IADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 724
           + +L+EG  ++G V N+  +GAFVDLG   DGL+H++ ++ K V    E+V  GD + VK
Sbjct: 186 LENLQEGQAVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEINVK 244

Query: 725 VMEVDVARKRIGLSMK 740
           V++ D  R R+ L +K
Sbjct: 245 VLKYDRERTRVSLGLK 260



 Score = 52.0 bits (123), Expect = 9e-11
 Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 8/101 (7%)

Query: 670 EGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQL--SHKFVNDAREVVKTGDIVKVKVME 727
           E   L G V+N+  +G FV++    +GLVHVS++  ++K ++ ++ VV  GD V+V V++
Sbjct: 276 ENTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSK-VVNLGDEVEVLVLD 334

Query: 728 VDVARKRIGLSMKLDAAPARRDGPRDNRFEGAGRGQQQQGR 768
           +D  R+RI L +K       +  P D+  E   +G +  G+
Sbjct: 335 IDEERRRISLGLK-----QCKTNPWDDFAERYAKGDKVTGK 370



 Score = 51.2 bits (121), Expect = 1e-10
 Identities = 28/76 (36%), Positives = 43/76 (56%)

Query: 665 IADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 724
           +AD K+G I+ GTV+ V   G  ++L    +G + VS +S + + DA  V   GD V+ K
Sbjct: 445 LADKKKGAIVTGTVTAVDAKGVTIELAETVEGYLRVSDISRERIEDASTVYSVGDTVESK 504

Query: 725 VMEVDVARKRIGLSMK 740
            M VD   + I LS++
Sbjct: 505 FMGVDRKNRSISLSIR 520



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 663 DDIAD-LKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFV-NDAREVVKTGDI 720
           DD A+   +G  + G + ++  FG F+ L    DGLVH+S +S      +A    K GD 
Sbjct: 355 DDFAERYAKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEEAVSDYKKGDE 414

Query: 721 VKVKVMEVDVARKRIGLSMK 740
           +   V+ VD  R+RI L +K
Sbjct: 415 ISAVVLSVDPERERISLGVK 434