Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 771 a.a., transcriptional accessory protein from Dechlorosoma suillum PS

 Score =  895 bits (2312), Expect = 0.0
 Identities = 483/790 (61%), Positives = 584/790 (73%), Gaps = 30/790 (3%)

Query: 4   IIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSYLRE 63
           I  ++A E+     QV AAV LLD GATVPFIARYRKE T GLDDTQLR LE RL+YLRE
Sbjct: 5   IEHRIAEELGARPQQVMAAVALLDEGATVPFIARYRKEVTGGLDDTQLRNLEERLTYLRE 64

Query: 64  LEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFGIEP 123
           LEDRR AVL +IDEQGKLTPEL+AA++ A TKQ LED+YLP+KQKRRTK QIARE G++P
Sbjct: 65  LEDRRAAVLASIDEQGKLTPELKAAVDMADTKQRLEDLYLPYKQKRRTKAQIAREAGLQP 124

Query: 124 LADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAEDAAL 183
           LAD LLADPTL P  EA+ +        D K          VLDG R IL E++AEDA L
Sbjct: 125 LADALLADPTLVPESEAEKYFNAEAGFADTKA---------VLDGARQILMEQFAEDAEL 175

Query: 184 VQSLRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGRALD 243
           + SLR +L   G+LKS+L++G++E  A   KFRDYFEY E I  +PSHRALA+FRGR   
Sbjct: 176 LGSLRTYLDEHGILKSTLIAGQEEAGA---KFRDYFEYSEAISDIPSHRALALFRGRNEG 232

Query: 244 ILDAKLVLPVEPE----PGKPSVAEGRIALHLGWSHAGRPADDLLRKCVAWTWRVKLALS 299
            +   LVL  E +    P  P+  E RIA   G    GRPAD  L   V W WRVK+AL 
Sbjct: 233 AISLALVLDSELDEENKPLGPNPCELRIAKRFGIKDQGRPADKWLADTVRWAWRVKMALH 292

Query: 300 TERDLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGK 359
            E +L T LRE AE+ AI+VF  NL+DLLLAAPAG +  MGLDPG+RTGVKVAVVD TGK
Sbjct: 293 LETELMTVLREKAEEEAIRVFGRNLKDLLLAAPAGQKATMGLDPGLRTGVKVAVVDQTGK 352

Query: 360 LVETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKM 419
           L++TAT++PHEPR+DWEGSLHTL  L  KH VNLIAIGNGTASRETDKLAADLI++    
Sbjct: 353 LLDTATIYPHEPRRDWEGSLHTLAVLAQKHNVNLIAIGNGTASRETDKLAADLIRI---- 408

Query: 420 AAQAGAPEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVK 479
                +P + + KVVVSEAGASVYSASEFA++E P++DVSLRGA SIARRLQDPLAELVK
Sbjct: 409 ----ASPHMALAKVVVSEAGASVYSASEFAAREFPELDVSLRGAVSIARRLQDPLAELVK 464

Query: 480 IDPKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKA 539
           I+PKSIGVGQYQHDV+Q++LAR L  VVEDCVN+VGVD+NTAS+PLL+R+SGL+ ++A  
Sbjct: 465 IEPKSIGVGQYQHDVSQTKLARALDGVVEDCVNAVGVDVNTASIPLLARISGLNQTLAAN 524

Query: 540 VVRWRESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQI 599
           +V +R+ +G F  R  L +V   G K FEQ+AGFLR+    +PLD + VHPE YP+VE+I
Sbjct: 525 IVAYRDQHGPFPNRLALKNVPRLGDKTFEQAAGFLRVPSSDNPLDASAVHPEAYPVVERI 584

Query: 600 IVKTGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFN 659
           +    K I E++G A ++K+L+P  + +EKFG+ TV+DIL ELEKPGRDPRP+FK A F 
Sbjct: 585 LADIKKGIKEVIGDARLVKSLQPVKYTDEKFGLPTVQDILKELEKPGRDPRPEFKTAVFK 644

Query: 660 DGVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGD 719
           DGV+++ DL+ GMILEG V+NVA FGAFVD+GVHQDGLVHVS LS KFV D  EVVK GD
Sbjct: 645 DGVEEMRDLQPGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSALSTKFVKDPHEVVKAGD 704

Query: 720 IVKVKVMEVDVARKRIGLSMKLDAAPARRDGPRDNRFEGAGRGQQQQGRRDNSPQPAGQ- 778
           IVKVKV+EVD+ARKRI L+M+LD A  +  G      + AG     + R+    QPAGQ 
Sbjct: 705 IVKVKVLEVDMARKRIALTMRLDDAFGKSTGGG----KPAGAPMTAKARQREDAQPAGQN 760

Query: 779 -MASAFAKLQ 787
            MA+AFAKL+
Sbjct: 761 AMAAAFAKLK 770