Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 564 a.a., 30S ribosomal protein S1 (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 63.9 bits (154), Expect = 2e-14
 Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 9/120 (7%)

Query: 621 KPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFNDGVDDIADL----KEGMILEG 676
           +P+ F  + F  +  +     LE+ GR+     ++    +  + ++ L    KEG +LEG
Sbjct: 187 EPDSFTGQTFQFLITR-----LEQNGRNIVVSRRMLLEREQAESLSALMENVKEGDVLEG 241

Query: 677 TVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVMEVDVARKRIG 736
           TV+ +A FGAFV++    +G+VHVS+LS   V  A E V  GD V+VKV+ +  A +  G
Sbjct: 242 TVARLAPFGAFVEIAPGLEGMVHVSELSWSRVQQADEAVSVGDKVRVKVLGIAGAEEGKG 301



 Score = 62.0 bits (149), Expect = 9e-14
 Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 8/116 (6%)

Query: 633 ITVKDILGELE-KPGRD----PRPDFKVARFN-DGVDDIAD-LKEGMILEGTVSNVAQFG 685
           + V  I G  E K G+D    PR    + + + D   D+AD L    IL G V+ +A FG
Sbjct: 288 VKVLGIAGAEEGKGGKDSRKGPRISLSIRQVSGDPWQDVADRLDADQILTGKVTRLAPFG 347

Query: 686 AFVDLGVHQDGLVHVSQLS-HKFVNDAREVVKTGDIVKVKVMEVDVARKRIGLSMK 740
           AF+++    +GLVH+S++S  + +N   E V  G+ V V++ E+D ARKR+ LS++
Sbjct: 348 AFIEVLPGVEGLVHLSEMSWTRRINKPEEAVTPGETVSVRIKELDPARKRLSLSLR 403



 Score = 34.3 bits (77), Expect = 2e-05
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 671 GMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVMEVDV 730
           G  + GTV   A FG FV+L     GL+  +  +    +     +  G  V + V ++DV
Sbjct: 420 GSTVTGTVEKRAPFGLFVNLAPGVTGLLPNAVAATSPQSKTYAGLNPGAEVSLVVRDLDV 479

Query: 731 ARKRIGLS-----------MKLDAAPARRDGPRDNR---FEGAGRGQQQQGRRDNSPQPA 776
             +RI L+            +  A P +R+ PR+ R    +GA  G +  GR   S  PA
Sbjct: 480 KARRISLAPADATGEDDDEWRKLAQPQKRE-PREGRGGSRDGARPGGRDGGRGSRSSAPA 538