Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

 Score =  564 bits (1453), Expect = e-165
 Identities = 321/741 (43%), Positives = 465/741 (62%), Gaps = 37/741 (4%)

Query: 4   IIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSYLRE 63
           I +QL  E  +   QV+  V+L+D G T+PFI+RYRKEAT  LDD  LR+   RL+YLR 
Sbjct: 3   IFQQLQKEFNLKTFQVENTVKLIDEGNTIPFISRYRKEATGSLDDVVLRKFFDRLNYLRN 62

Query: 64  LEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFGIEP 123
           LED++  ++K IDEQGKLT EL+  IE +    ELEDIY PF+ KR+T+  IA   G++P
Sbjct: 63  LEDKKAQIIKLIDEQGKLTAELKQKIEKSELLTELEDIYRPFRPKRKTRATIAESKGLKP 122

Query: 124 LADKLLADPTLDPAVE-AKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAEDAA 182
           L++ +L      P  E A+ F+ P           + ++V   + G +DI++E  +++A 
Sbjct: 123 LSELILKQILEKPIEELAEGFVNPEL---------EVNSVEDAISGAKDIIAEEISDNAD 173

Query: 183 LVQSLRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGRAL 242
             + +R   ++EG++     S K +N  + + +  Y+EY E I ++P HR LA+ RG + 
Sbjct: 174 YRKFIRENTFSEGII-----SVKAKNVDEKSVYEMYYEYSEAINKIPGHRILAINRGESE 228

Query: 243 DILDAKLVLPVEPEPGKPSVAEGRIALHLGWSHAGRPADDLLRKCVAWTWRVKLALSTER 302
            IL  KL  PVE            I  ++   ++     ++L+  V  +++  +A S ER
Sbjct: 229 KILQVKLDAPVE-------FIHDWIFKNIILENS--QTSEILKDTVIDSYKRLIAPSIER 279

Query: 303 DLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGKLVE 362
           ++   L E AE  AI+VF+ NL+ LLL  P   + V+G DP  RTG K+A+VD TGK+++
Sbjct: 280 EIRNSLTEKAENGAIEVFSKNLKQLLLQPPIKNKTVLGWDPAFRTGCKIALVDETGKVLD 339

Query: 363 TATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKMAAQ 422
              V+P EP      +   + +L  K+ ++++AIGNGTASRE++ + ++++K +      
Sbjct: 340 KTVVYPTEPHNKVTETKKQVKELIIKYDIDVVAIGNGTASRESEHIVSEILKEVVN---- 395

Query: 423 AGAPEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKIDP 482
                  V  V+V+EAGASVYSASE  S E P+ DV +R A SIARRLQDPLAELVKIDP
Sbjct: 396 ------DVYYVIVNEAGASVYSASELGSDEFPEYDVGIRSAISIARRLQDPLAELVKIDP 449

Query: 483 KSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKAVVR 542
           KSIGVGQYQHD+NQ +L+ +L AVVE  VNSVGVDLNTASV LL+ VSG++  +AK +V 
Sbjct: 450 KSIGVGQYQHDMNQKKLSESLGAVVESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVA 509

Query: 543 WRESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQIIVK 602
           +R  NG F +RK+LL V+  G KAFEQ AGFLRI  G +  D TGVHPE+Y + E ++ +
Sbjct: 510 YRTENGKFESRKELLKVSKLGKKAFEQCAGFLRIPEGKNLFDNTGVHPESYKIAENLLNE 569

Query: 603 TGKPIAELMGRA--EMLKTLKPELFANE-KFGVITVKDILGELEKPGRDPRPDFKVARFN 659
               I ++  +   ++ + +  E  A +   G+ T++DI+ ELEKPGRDPR D       
Sbjct: 570 LNISIKDIKEKKIDKISEKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLR 629

Query: 660 DGVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGD 719
             V ++ DLKEGMIL+GTV N+  FGAF+D+GVH DGL H+S+++ +F+    +V+  GD
Sbjct: 630 SDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGD 689

Query: 720 IVKVKVMEVDVARKRIGLSMK 740
           IV V VM++D  +KR+ LS+K
Sbjct: 690 IVDVMVMDIDFDKKRVSLSIK 710