Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 776 a.a., transcription accessory protein from Klebsiella michiganensis M5al

 Score =  812 bits (2098), Expect = 0.0
 Identities = 453/795 (56%), Positives = 548/795 (68%), Gaps = 31/795 (3%)

Query: 4   IIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSYLRE 63
           + R +A E++    QV+AAV LLD G TVPFIARYRKE T GLDDTQLR LE RL YLRE
Sbjct: 6   LCRIIAGELQARAEQVEAAVRLLDEGNTVPFIARYRKEVTGGLDDTQLRNLETRLGYLRE 65

Query: 64  LEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFGIEP 123
           LEDRR A+LK+I EQGKLT  L  AI    +K ELED+YLP+K KRRT+GQIA E G+EP
Sbjct: 66  LEDRRQAILKSIGEQGKLTEALEKAINGTLSKTELEDLYLPYKPKRRTRGQIAIEAGLEP 125

Query: 124 LADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAEDAAL 183
           LA+ L  +P+ DP  EA  ++     + D K           LDG R IL ER+AEDAAL
Sbjct: 126 LAELLWNEPSHDPETEAAKYIDADKGVADSKAA---------LDGARYILMERFAEDAAL 176

Query: 184 VQSLRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGRALD 243
           +  +R +LW    L ++++SGK+E  A   KFRDYF++ EPI  VPSHRALA+FRGR   
Sbjct: 177 LAKVRDYLWKNAHLVATVVSGKEEEGA---KFRDYFDHHEPIATVPSHRALAMFRGRNEG 233

Query: 244 ILDAKLVL-PVEPEPGKPSVAEGRIALHLGWSHAGRPADDLLRKCVAWTWRVKLALSTER 302
           +L   L   P   EP K S  E  I  HLG      PAD   +  V+WTWR+K+ +  E 
Sbjct: 234 VLQLSLNADPQFDEPPKESHGEQIIIDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLET 293

Query: 303 DLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGKLVE 362
           +L   +RE AE  AI VFA NL DLL+AAPAG R  MGLDPG+RTGVKVAVVD TGKLV 
Sbjct: 294 ELMGTVRERAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVA 353

Query: 363 TATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKMAAQ 422
           T T++PH  +     +   +  LC K+ V L+AIGNGTASRET++   D+ K   K+ AQ
Sbjct: 354 TDTIYPHTGQA--AKAAVAVAALCEKYNVELVAIGNGTASRETERFFLDVQKQFPKVTAQ 411

Query: 423 AGAPEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKIDP 482
                    KV+VSEAGASVYSASE A+ E PD+DVSLRGA SIARRLQDPLAELVKIDP
Sbjct: 412 ---------KVIVSEAGASVYSASELAALEFPDLDVSLRGAVSIARRLQDPLAELVKIDP 462

Query: 483 KSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKAVVR 542
           KSIGVGQYQHDV+Q++LAR L AVVEDCVN+VGVDLNTASVPLL+RV+GL+  +A+ +V 
Sbjct: 463 KSIGVGQYQHDVSQTQLARKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVS 522

Query: 543 WRESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQIIVK 602
           WR+ NG F  R+QLL V+  GPKAFEQ AGFLRI  G +PLD + VHPE YP+VE+I+  
Sbjct: 523 WRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAA 582

Query: 603 TGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFNDGV 662
           T + + +LMG +  L+ LK   F ++KFGV TV DI+ ELEKPGRDPRP+FK A+F DGV
Sbjct: 583 TQQALKDLMGNSSELRNLKAVDFTDDKFGVPTVTDIIKELEKPGRDPRPEFKTAQFADGV 642

Query: 663 DDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVK 722
           + + DL  GMILEG V+NV  FGAFVD+GVHQDGLVH+S LS+KFV D   VVK GDIVK
Sbjct: 643 ETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVK 702

Query: 723 VKVMEVDVARKRIGLSMKLDAAP----ARRDGPRDNRFEGAGRGQQQQGRRDNSPQPAGQ 778
           VKVMEVD+ RKRI L+M+LD  P    ARR G  D R +G     +    R    QPAG 
Sbjct: 703 VKVMEVDLPRKRIALTMRLDEQPGDSNARRGGGND-RPQGNRPAAKAAKPRGREAQPAGN 761

Query: 779 --MASAFAKLQGLRK 791
             M  A A   G ++
Sbjct: 762 SAMMDALAAAMGKKR 776