Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 557 a.a., 30S ribosomal protein S1 from Klebsiella michiganensis M5al

 Score = 65.1 bits (157), Expect = 1e-14
 Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 665 IADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 724
           + +L+EGM ++G V N+  +GAFVDLG   DGL+H++ ++ K V    E+V  GD + VK
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244

Query: 725 VMEVDVARKRIGLSMK 740
           V++ D  R R+ L +K
Sbjct: 245 VLKFDRERTRVSLGLK 260



 Score = 56.6 bits (135), Expect = 4e-12
 Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 3/73 (4%)

Query: 670 EGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQL--SHKFVNDAREVVKTGDIVKVKVME 727
           EG  L G V+N+  +G FV++    +GLVHVS++  ++K ++ ++ VV  GD+V+V V++
Sbjct: 276 EGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSK-VVNVGDVVEVMVLD 334

Query: 728 VDVARKRIGLSMK 740
           +D  R+RI L +K
Sbjct: 335 IDEERRRISLGLK 347



 Score = 47.8 bits (112), Expect = 2e-09
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 670 EGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFV-NDAREVVKTGDIVKVKVMEV 728
           +G  +EG + ++  FG F+ L    DGLVH+S +S      +A    K GD +   V++V
Sbjct: 363 KGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQV 422

Query: 729 DVARKRIGLSMK 740
           D  R+RI L +K
Sbjct: 423 DAERERISLGVK 434