Pairwise Alignments

Query, 376 a.a., Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1) from Variovorax sp. SCN45

Subject, 385 a.a., 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) from Shewanella oneidensis MR-1

 Score =  300 bits (769), Expect = 3e-86
 Identities = 161/373 (43%), Positives = 231/373 (61%), Gaps = 3/373 (0%)

Query: 4   NADQEAIRDAVRDFSQAELWPNAPKWDREHSFPKEAHQGLAALGAYGICVPEEHGGAGLD 63
           N DQ    +  R F+  EL P A KWD EH FPK+  Q    LG   +  PE  GG GL 
Sbjct: 6   NEDQRQFAELARQFATDELAPFAAKWDEEHHFPKDVIQKAGELGFCSLYSPESEGGMGLS 65

Query: 64  YLTLALVLEEIAAGDGGTSTAISVTNCPVNAILMRYGNAQQKKQWLEPLAQGKMLGAFCL 123
            L  +++ EE++ G   T+  +++ N     ++  +G    ++ W EPL  G+ML ++CL
Sbjct: 66  RLDASIIFEELSKGCTATTAMLTIHNM-ATWMVTTWGTETLRQAWSEPLTTGQMLASYCL 124

Query: 124 TEPQAGSDASSLRTTARKDGDAYVIDGVKQFITSGKNGQVAIVIAVTDKGAGKRGMSAFL 183
           TEP AGSDA+SL+T A  DGD YV+ G K FI+   + ++ +V+  T + AG +G+SA  
Sbjct: 125 TEPGAGSDAASLQTKAVPDGDEYVVSGSKMFISGAGSTELLVVMCRTGQ-AGPKGISAIA 183

Query: 184 VPTDAPGYNVARLEDKLGQHSSDTAQINFDGCRIPVENLIGAEGEGYKIALGALEGGRIG 243
           +P D+ G    + EDK+G ++  T  + FD  R+PV NL+G EG+G+  A+  L+GGRI 
Sbjct: 184 IPADSEGIIYGKAEDKMGWNAQPTRLVTFDNVRVPVANLLGEEGQGFTFAMKGLDGGRIN 243

Query: 244 IAAQSVGMARSAFDVALAYAKERQAFGGSIFDQQAVGFRLAECATQLEAARQLIWHAAAL 303
           IA  SVG A++A + A  Y  ERQ FG  +   QA+ F+LA+ AT+L AARQ++  AA  
Sbjct: 244 IATCSVGTAQAALERASQYMNERQQFGKPLAAFQALQFKLADMATELVAARQMVRLAAFK 303

Query: 304 RDAGRP-CLKEAAMAKLFASEMAERVCSAAIQTLGGYGYVNDFPLERIYRDVRVCQIYEG 362
            D+G P      AMAK FA+++  +VC AA+Q  GGYGY+ ++PLER +RDVRV QI EG
Sbjct: 304 LDSGDPEGTAYCAMAKRFATDVGFQVCDAALQIHGGYGYIREYPLERHFRDVRVHQILEG 363

Query: 363 TSDIQKLLIQRAL 375
           T++I +L+I R L
Sbjct: 364 TNEIMRLIIARRL 376