Pairwise Alignments

Query, 306 a.a., Pseudouridine synthase (EC 4.2.1.70), PA2043 type from Variovorax sp. SCN45

Subject, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

 Score = 80.9 bits (198), Expect = 4e-20
 Identities = 73/218 (33%), Positives = 101/218 (46%), Gaps = 24/218 (11%)

Query: 51  RIAANDVIDEHHVPVTAERRYQSPLRVYYYRSLDNEVHIPFEEQVVFRDDQLLVVDKPPF 110
           ++ A DV+     PVT E +   P       S   E+    E  +V+ DD LL+++KP  
Sbjct: 59  KLEAGDVV--RVPPVTVEVKENEPAPPSTKLSKVAEL----EHCIVYEDDHLLILNKPSG 112

Query: 111 LPVTPTGKYLQQSLLVRLK------RKLELDDLVPLHRIDRSTSGLVLFSVRPETRGAYQ 164
             V   G  L    +  L+      R LEL     +HRIDR TSG++L + +       Q
Sbjct: 113 TAVHG-GSGLHFGAIEALRALRPQARFLEL-----VHRIDRDTSGILLVAKKRSALRHLQ 166

Query: 165 AMFPERRIDKHYEAVVP--WQDGVSSVPATYRSRLVDDEHFMRVREEPGEPNSETHIELL 222
           A F E+ + K+Y A+V   W      V A     L+ +E    VR  P    SET   +L
Sbjct: 167 AQFREKTVQKYYYALVMGHWDAECKVVNAP----LLKNEVNSIVRVNPNGKPSETRFRIL 222

Query: 223 AAQGGHALLKLSPVTGRKHQLRVHCQALGMPIVNDPIY 260
                  L++ SPVTGR HQ+RVH Q +G PI  D  Y
Sbjct: 223 EKFAEATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRY 260