Pairwise Alignments

Query, 306 a.a., Pseudouridine synthase (EC 4.2.1.70), PA2043 type from Variovorax sp. SCN45

Subject, 317 a.a., RluA family pseudouridine synthase from Synechocystis sp000284455 PCC 6803

 Score = 97.4 bits (241), Expect = 4e-25
 Identities = 75/267 (28%), Positives = 120/267 (44%), Gaps = 25/267 (9%)

Query: 6   PPKLPLPTR-----DGVGPSCVGLPYGPWPTIAEFLIERFPAITREAWLERIAANDV-ID 59
           P   P P +     D V P   G       T+ +F  +R+    R+AW ERI    + +D
Sbjct: 2   PSTTPKPNQGWIYTDRVNPKAAG------QTVLDFYSQRYLHSERQAWQERIEQGQIEVD 55

Query: 60  EHHVPVTAERRYQSPLRVYYYRSLDNEVHIPFEEQVVFRDDQLLVVDKPPFLPVTPTGKY 119
              V  T     Q+   + Y+RS   E  +P +  V+ RD+ L  +DKP  LPV P G +
Sbjct: 56  GKTVDPTYP--LQAGQTLTYWRSPWVEPEVPLQLSVLHRDEDLWAIDKPSGLPVLPGGDF 113

Query: 120 LQQSLLVRLKRKLELDDLVPLHRIDRSTSGLVLFSVRPETRGAYQAMFPERRIDKHYEAV 179
           +  ++L +LK +   + L PLHR+   TSGL+L       R      F E    K Y  V
Sbjct: 114 VYHTVLEQLKIQYPQESLFPLHRLGTGTSGLLLLGRSTLGRRELSRQFREHICRKIYRTV 173

Query: 180 VPWQDGVSSVPATYRSRLVDDE------HFMRVREEPGEPNSETHIELLAAQGGHALLKL 233
           +    G   +P  +       +       ++      G+P ++++  +LA       L++
Sbjct: 174 I----GPCDLPEKFECHQAIGKIPYPQLGYIYAASSHGKP-AQSYGRILARSPEKTWLEV 228

Query: 234 SPVTGRKHQLRVHCQALGMPIVNDPIY 260
              TGR HQ+R+H  +LG P++ D +Y
Sbjct: 229 EIRTGRPHQIRIHLASLGYPLLGDRLY 255